Workshop: Metabolic Modelling and its Applications

27 - 30 June 2016

Tribhuvan University, Kirtipur, Kathmandu, Nepal

Tutors

Application

Instructions for workshop attendees

Timetable

Day

Time

Room

Activity

Resources

Who

Mon 27th, AM

10:30

Arrival and registration

SBAN

11:00

Welcome talks

MP + TU

11:30

Talk: Introductory theory

Slides

MP

12:30

Lunch

All

Mon 27th, PM

14:00

Talk: Python, object-orientation and models.

Slides

MP

15:00

Practical 0: Checking ScrumPy Installation and familiarisation with the Python language.

Instructions

All

17:30

Close

Tue 28th, AM

09:30

Talk: Structural analysis of small models. (+ break)

Slides

DF

11:00

Talk: Introduction to plant metabolism and its modelling

Slides Slides2

DS, KA, MP

12:30

Lunch

Tue 28th, PM

14:00

Practical 1: Structural analysis of small models

Instructions

All

17:00

Close

Wed 29th, AM

09:30

Talk: Sources of data for metabolic models

Slides

DF

10:15

Talk: Construction of Genome-Scale Models

Slides

MP

11:15

Talk: Linear Programming and Flux Balance Analysis

Slides

MP

12:30

Lunch

Wed 29th, PM

14:00

Practical 2: Construction of a working ScrumPy model from databases

Instructions

All

15:30

Practical 3: Flux Balance Analysis of a simple model

Instructions

All

17:00

Close

Thur 30th, AM

09:30

Talk: Biotechnological Applications of Metabolic Network Analysis

Slides

DF

10:30

Talk: Genome scale modelling of Arabidopsis

Slides

KA

11:30

Talk: Genome scale modelling of a diatom for oil production

Slides

DS

12:30

Lunch

Thur 30th, PM

14:00

Practical 4: GSM of Arabidopsis – metabolic phenotypes of mutants – metabolic responses to light intensity

instructions

All

16:30

Concluding remarks and presentation of certificates

All

17:00

Close of the Workshop

None: Meetings/Nepal2016 (last edited 2016-09-16 13:21:02 by mark)