= Portugal PhD Programme, Systems Biology Module =
== Metabolic Modelling with reference to Plant Biochemistry ==
=== David Fell's Lecture slides ===
 1. [[http://mudsharkstatic.brookes.ac.uk/Lisbon2018/Intro.pdf|Introductory lecture; elementary modes analysis]]
 1. Application of linear programming to plant metabolism:
  1. [[http://mudsharkstatic.brookes.ac.uk/Lisbon2018/L2i.pdf|Summary of photosynthetic metabolism]]
  1. [[http://mudsharkstatic.brookes.ac.uk/Lisbon2018/L2aLP.pdf|Revision of LP/FBA, with additional analysis techniques]]
  1. [[http://mudsharkstatic.brookes.ac.uk/Lisbon2018/L2b.pdf|Application of FBA to a GSM of rice]]
  1. [[http://mudsharkstatic.brookes.ac.uk/Lisbon2018/L2cAraGSM.pdf|Explaining metabolism of Calvin Cycle knokouts with a GSM of Arabidopsis]]
 1. [[http://mudsharkstatic.brookes.ac.uk/Lisbon2018/L3.pdf|Analysis of photorespiration]].

=== Other resources ===
 1. [[http://mudsharkstatic.brookes.ac.uk/Lisbon2018/Exercise1.pdf|Pathway construction exercise 1]]