=== (Under Construction - Contents Liable to Change) ===
= Workshop  on Metabolic Modelling =
== Nottingham 2024 ==
== Tutors ==
 * Mark Poolman   (MP: Oxford Brookes University)
 * Trunil Desai       (DS:  Oxford Brookes University)
 * Cristiana Sebu  (CS: University of Malta)
 * Prof. David Fell (DF:  Oxford Brookes University ) - Online

== Reading List ==
 . A reading list for topics covered in the course is provided [[https://mudshark.brookes.ac.uk/Meetings/Nottingham2022/Reading|here]]

== Course Timetable and Resources ==
||'''Day''' ||'''Time''' ||'''Activity''' ||'''Links''' ||'''Lecturer''' ||
||Monday ||AM           ''' ''' || || || ||
||09/12/2024 ||09:00 ||Arrival, Admin & Registration || || ||
|| ||PM || || || ||
|| ||12:00 ||Lunch || || ||
|| ||13:00 ||Welcome and introduction to the course.    Outline of the week. || ||MP ''et al '' ||
|| ||14:00 ||'''L1''':  Introduction to python and metabolic modelling ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/L1.pdf|Slides]] ||MP ||
|| || ||Tea/coffee || || ||
|| ||15:00 ||'''P1''': Computers: checking internet connectivity, software installation.-> P2 ||[[Meetings/Nottingham2024/Installation|Installing ScrumPy]]. ||All ||
|| ||16:00 ||'''P2''': Introduction to Python ||[[Meetings/Nottingham2024/Prac2|Prac2]] ||All ||
||Tuesday ''' ''' ||AM           ''' ''' || || || ||
|| ||09:00 ||'''P2''': Introduction to Python ''(continued) '' ||[[Meetings/Nottingham2024/Prac2|Prac2-(ctd)]] ||All ||
|| ||10:00 ||'''L2:''' Introduction to metabolic modelling ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/L2.pdf|Slides]] ||DF ||
|| ||11:00 ||'''L3:''' Null space, subsets and elementary modes ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/L3.pdf|Slides]] ||CS ||
|| ||13:00 ||Lunch || || ||
|| ||14:00 ||'''P3:''' Basic Model Properties ||[[Meetings/Nottingham2024/Prac3|Prac3]]  [[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/P3.pdf|Slides]] ||All / MP ||
|| ||16:00 ||'''L4: '''Construction and Curation of GSMs ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/L4.pdf|Slides]] ||TD ||
|| || || || || ||
||Wednesday ''' ''' || || || || ||
|| ||09:00 ||'''P3:''' ''(continued)'' || ||All ||
|| ||10:00 ||'''L5:''' Biotechnological applications of elementary modes analysis ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/L5.pdf|Slides]] ||DF ||
|| ||11:00 ||'''P4.''' Elementary Modes of the Woods-Ljungdahl Pathway ||[[Meetings/Nottingham2024/Prac4|Prac4]] ||All ||
|| ||13:00 ||Lunch || || ||
|| ||14:00 ||'''L6:''' Linear programming and flux balance analysis ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/L6.pdf|Slides]] ||MP ||
|| ||15:00 ||'''L7: ''' ''Phaeodactylum tricornutum'' ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/L7.pdf|Slides]] ||MP ||
|| || ||'''P5:  '''TAG synthesis  in'''  '''''P. tricornutum'' ||[[Meetings/Nottingham2024/Prac5|Prac5]] ||All ||
|| || || || || ||
||Thursday ''' ''' ||AM          ''' ''' || || || ||
|| ||09:00 ||'''P5:''''' (continued) '' ||[[Meetings/Nottingham2024/Prac5|Prac5]] ||- ||
|| ||10:00 ||'''L8:''' Reaction Correlation Coefficients and LPEMs ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/L8.pdf|Slides]] ||CS ||
|| ||13:00 ||Lunch || || ||
|| ||14:00 ||'''P6:''' Elementary Modes in the'' A. woodii ''model ||[[Meetings/Nottingham2024/Prac6|Prac6]] ||All ||
|| || || || || ||
||Friday ||AM || || || ||
|| ||09:00 ||Discussion || ||All ||
|| ||12:00 ||Lunch ||
|| ||14:00 ||Go Home ! ||