Differences between revisions 4 and 5
Revision 4 as of 2014-12-08 17:05:44
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Editor: david
Comment:
Revision 5 as of 2014-12-09 23:15:36
Size: 22920
Editor: david
Comment: Updated timetable
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||<height="23px">'''Date''' ||'''Day''' ||'''Time''' ||'''Place''' ||'''Activity''' ||'''Links''' ||'''Lecturer''' ||
||<height="23px">15/12/14 ||Monday ||13:00 || ||Room registration opens at St Anne's Lodge || || ||
||<height="23px"> || ||13:30 ||S8 ||Workshop registration opens. || ||DF, DS, KA ||
||<height="23px"> || ||14:00 ||S8 ||Opening and introductions || ||DF ||
||<height="53px"> || ||14:30 ||S8 ||L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week ||Slides ||DF ||
||<height="23px"> || ||15:30 ||S9 ||Tea/coffee || || ||
||<height="23px"> || ||16:00 ||S8 ||L2. Sources of data for metabolic models ||Slides ||DF ||
||<height="38px"> || ||17:00 ||S9 ||P1. Computers: checking internet connectivity, software installation ||Instructions ||DF, MP, DS, KA,TK ||
||<height="23px"> || ||18:30 || ||Room registration (cont) || || ||
||<height="23px"> || ||19:00 ||S9 ||Opening reception || || ||
||<height="23px"> || ||19:30 ||S9 ||Dinner || || ||
||<height="23px"> || || || || || || ||
||<height="23px">16/12/14 ||Tuesday ||08:00 ||Hall ||Breakfast || || ||
||<height="23px"> || ||09:00 ||S8 ||L3. Null space and elementary modes ||Slides ||DF ||
||<height="36px"> || ||10:00 || ||L4. Computational representation of metabolic networks ||Slides ||MP ||
||<height="23px"> || ||10:30 ||S9 ||Coffee/Tea || || ||
||<height="36px"> || ||11:00 ||S8 ||P2. Python and ScrumPy ||Instructions ||MP, DF, DS, TK ||
||<height="23px"> || ||12:30 ||S9 ||Lunch || || ||
||<height="36px"> || ||13:30 ||S8 ||L5. Biotechnological applications of metabolic network analysis ||Slides ||DF ||
||<height="36px"> || ||14:30 ||S8 ||P3. Null space analysis with ScrumPy ||Instructions ||DF, HH, DS, TK ||
||<height="23px"> || ||15:30 ||S9 ||Tea/Coffee || || ||
||<height="36px"> || ||16:00 ||S8 ||L6. Linear Programming and Flux Balance Analysis ||Slides ||HH ||
||<height="23px"> || ||17:00 ||S8 ||P2 and P3 continued || || ||
||<height="23px"> || ||17:30 || ||Close || || ||
||<height="23px"> || ||19:30 ||S9 ||Dinner || || ||
||<height="23px"> || || || || || || ||
||<height="23px">17/12/14 ||Wednesday ||08:00 ||Hall ||Breakfast || || ||
||<height="36px"> || ||09:00 ||S8 ||L7. Building genome-scale metabolic networks ||Slides ||MP ||
||<height="23px"> || ||10:30 ||S9 ||Coffee/Tea || || ||
||<height="53px"> || ||11:00 ||S8 ||P4. Elementary modes of a simple model ||Instructions ||MP, DF, KA ||
||<height="23px"> || ||12:30 ||S9 ||Lunch || || ||
||<height="36px"> || ||13:30 ||S8 ||L8. Examples of analyzing genome scale metabolic models ||Slides ||MP or DF ||
||<height="53px"> || ||14:30 ||S8 ||P5. Building models from !MetaCyc with ScrumPy – group work ||Instructions ||MP, DF, HH, KA ||
||<height="23px"> || ||15:30 ||S9 ||Tea/Coffee || || ||
||<height="53px"> || ||16:00 ||S8 ||P5 continued || || ||
||<height="23px"> || ||17:30 || ||Close || || ||
||<height="23px"> || ||19:30 ||UCR ||Dinner (Upper Common Room) || || ||
||<height="23px"> || || || || || || ||
||<height="23px">18/12/14 ||Thursday ||08:00 ||Hall ||Breakfast || || ||
||<height="19px"> || ||09:00 ||S8 ||L9. Examples of genome scale modelling ||Slides ||DS KA ||
||<height="23px"> || ||10:30 ||S9 ||Coffee/Tea || || ||
||<height="23px"> || ||11:00 ||S8 ||P6. Flux Balance Analysis of a simple model ||Instructions ||DF, KA, DS ||
||<height="23px"> || ||12:30 ||S9 ||Lunch || || ||
||<height="36px"> || ||13:30 ||S8 ||L10. Modelling energy metabolism in Salmonella ||Slides ||HH ||
||<height="23px"> || ||14:30 ||S8 ||P7. FBA mini-projects (Group work) ||Instructions ||DF, MP, DS, KA ||
||<height="23px"> || ||15:30 ||S9 ||Tea/Coffee || || ||
||<height="23px"> || ||16:00 ||S8 ||P7 continued || ||DF, MP, DS, KA ||
||<height="23px"> || ||17:30 || ||Close || || ||
||<height="19px"> || ||19:30 ||S9 ||'''Workshop dinner with cash bar''' || || ||
||<height="23px"> || || || || || || ||
||<height="23px">19/12/14 ||Friday ||08:00 ||Hall ||Breakfast || || ||
||<height="23px"> || ||09:00 ||S8 ||P7 continued || ||DF, MP, HH, DS, KA ||
||<height="23px"> || ||10:30 ||S9 ||Coffee/Tea || || ||
||<height="23px"> || ||11:00 ||S8 ||Reports from groups || ||DF, MP, HH, DS, KA ||
||<height="23px"> || ||12:00 ||S8 ||Any questions? Closing remarks || ||DF ||
||<height="23px"> || ||12:30 ||S9 ||Sandwich lunch (packed) || || ||
||<height="23px"> || ||13:30 || ||Departure || || ||
||<height="20px" style="text-align:left;vertical-align:top">'''Day''' ||<style="text-align:left;vertical-align:top">'''Time''' ||<style="text-align:left;vertical-align:top">'''Place''' ||<style="text-align:left;vertical-align:top">'''Activity''' ||<style="text-align:left;vertical-align:top">'''Links''' ||<style="text-align:left;vertical-align:top">'''Lecturer''' ||
||<height="20px" style="text-align:left;vertical-align:top">'''Monday''' ||<style="text-align:left;vertical-align:top">13:00 ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">Room registration opens at St Anne's Lodge ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top">15/12/14 ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">Workshop registration opens. ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">DF, DS, KA ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">14:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">Opening and introductions ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">DF ||
||<height="56px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">14:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">DF ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">15:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Tea/coffee ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L2. Sources of data for metabolic models ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">DF ||
||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">17:00 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">P1. Computers: checking internet connectivity, software installation ||<style="text-align:left;vertical-align:top">Instructions ||<style="text-align:left;vertical-align:top">DF, MP, DS, KA,TK ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">18:30 ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">Room registration (cont) ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">19:00 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Opening reception ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">19:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Dinner ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="18px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="18px" style="text-align:left;vertical-align:top">'''Tuesday''' ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">Hall ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top">16/12/14 ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L3. Null space and elementary modes ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">DF ||
||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">10:00 ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">L4. Computational representation of metabolic networks ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">MP ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">10:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Coffee/Tea ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P2. Python and ScrumPy ||<style="text-align:left;vertical-align:top">Instructions ||<style="text-align:left;vertical-align:top">MP, DF, DS, TK ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Lunch ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L5. Biotechnological applications of metabolic network analysis ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">DF ||
||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">14:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P3. Null space analysis with ScrumPy ||<style="text-align:left;vertical-align:top">Instructions ||<style="text-align:left;vertical-align:top">DF, HH, DS, TK ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">15:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Tea/Coffee ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L6. Linear Programming and Flux Balance Analysis ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">HH ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">17:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P2 and P3 continued ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">17:30 ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">Close ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="18px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">19:00 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Dinner ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="18px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="18px" style="text-align:left;vertical-align:top">'''Wednesday''' ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">Hall ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="38px" style="text-align:left;vertical-align:top">17/12/14 ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L7. Building genome-scale metabolic networks ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">MP ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">10:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Coffee/Tea ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="56px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P4. Elementary modes of a simple model ||<style="text-align:left;vertical-align:top">Instructions ||<style="text-align:left;vertical-align:top">MP, DF, KA ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Lunch ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left">L8. Examples of analyzing genome scale metabolic models ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">MP or DF ||
||<height="56px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">14:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P5. Building models from !MetaCyc with ScrumPy – group work ||<style="text-align:left;vertical-align:top">Instructions ||<style="text-align:left;vertical-align:top">MP, DF, HH, KA ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">15:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Tea/Coffee ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="56px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P5 continued ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">MP, DF, HH, KA ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">17:30 ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">Close ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="18px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">19:00 ||<style="text-align:left;vertical-align:top">UCR ||<style="text-align:left;vertical-align:top">Dinner (Upper Common Room) ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="18px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="18px" style="text-align:left;vertical-align:top">'''Thursday''' ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">Hall ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top">18/12/14 ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L9. Examples of genome scale modelling ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">DS KA ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">10:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Coffee/Tea ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P6. Flux Balance Analysis of a simple model ||<style="text-align:left;vertical-align:top">Instructions ||<style="text-align:left;vertical-align:top">DF, KA, DS ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Lunch ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L10. Modelling energy metabolism in Salmonella ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">HH ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">14:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P7. FBA mini-projects (Group work) ||<style="text-align:left;vertical-align:top">Instructions ||<style="text-align:left;vertical-align:top">DF, MP, DS, KA ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">15:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Tea/Coffee ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P7 continued ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">DF, MP, DS, KA ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">17:30 ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">Close ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">18:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Pre-dinner drinks ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">19:00 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">'''Workshop dinner with cash bar''' ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="18px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="18px" style="text-align:left;vertical-align:top">'''Friday''' ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">Hall ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top">19/12/14 ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P7 continued ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">DF, MP, HH, DS, KA ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">10:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Coffee/Tea ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">Reports from groups ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">DF, MP, HH, DS, KA ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">12:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">Any questions? Closing remarks ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">DF ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Sandwich lunch (packed) ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">Departure ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||

C1Net Workshop on Metabolic Modelling

Course Timetable and Resources Index (Provisional)

Day

Time

Place

Activity

Links

Lecturer

Monday

13:00

Room registration opens at St Anne's Lodge

15/12/14

13:30

S8

Workshop registration opens.

DF, DS, KA

14:00

S8

Opening and introductions

DF

14:30

S8

L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week

Slides

DF

15:30

S9

Tea/coffee

16:00

S8

L2. Sources of data for metabolic models

Slides

DF

17:00

S9

P1. Computers: checking internet connectivity, software installation

Instructions

DF, MP, DS, KA,TK

18:30

Room registration (cont)

19:00

S9

Opening reception

19:30

S9

Dinner

Tuesday

08:00

Hall

Breakfast

16/12/14

09:00

S8

L3. Null space and elementary modes

Slides

DF

10:00

L4. Computational representation of metabolic networks

Slides

MP

10:30

S9

Coffee/Tea

11:00

S8

P2. Python and ScrumPy

Instructions

MP, DF, DS, TK

12:30

S9

Lunch

13:30

S8

L5. Biotechnological applications of metabolic network analysis

Slides

DF

14:30

S8

P3. Null space analysis with ScrumPy

Instructions

DF, HH, DS, TK

15:30

S9

Tea/Coffee

16:00

S8

L6. Linear Programming and Flux Balance Analysis

Slides

HH

17:00

S8

P2 and P3 continued

17:30

Close

19:00

S9

Dinner

Wednesday

08:00

Hall

Breakfast

17/12/14

09:00

S8

L7. Building genome-scale metabolic networks

Slides

MP

10:30

S9

Coffee/Tea

11:00

S8

P4. Elementary modes of a simple model

Instructions

MP, DF, KA

12:30

S9

Lunch

13:30

S8

L8. Examples of analyzing genome scale metabolic models

Slides

MP or DF

14:30

S8

P5. Building models from MetaCyc with ScrumPy – group work

Instructions

MP, DF, HH, KA

15:30

S9

Tea/Coffee

16:00

S8

P5 continued

MP, DF, HH, KA

17:30

Close

19:00

UCR

Dinner (Upper Common Room)

Thursday

08:00

Hall

Breakfast

18/12/14

09:00

S8

L9. Examples of genome scale modelling

Slides

DS KA

10:30

S9

Coffee/Tea

11:00

S8

P6. Flux Balance Analysis of a simple model

Instructions

DF, KA, DS

12:30

S9

Lunch

13:30

S8

L10. Modelling energy metabolism in Salmonella

Slides

HH

14:30

S8

P7. FBA mini-projects (Group work)

Instructions

DF, MP, DS, KA

15:30

S9

Tea/Coffee

16:00

S8

P7 continued

DF, MP, DS, KA

17:30

Close

18:30

S9

Pre-dinner drinks

19:00

S9

Workshop dinner with cash bar

Friday

08:00

Hall

Breakfast

19/12/14

09:00

S8

P7 continued

DF, MP, HH, DS, KA

10:30

S9

Coffee/Tea

11:00

S8

Reports from groups

DF, MP, HH, DS, KA

12:00

S8

Any questions? Closing remarks

DF

12:30

S9

Sandwich lunch (packed)

13:30

Departure

None: Meetings/C1netWork1/Plan (last edited 2014-12-18 15:45:40 by david)