Self

C1Net Workshop on Metabolic Modelling

Course Timetable and Resources Index

Day

Time

Place

Activity

Links

Lecturer

Monday

13:00

Room registration opens at St Anne's Lodge

15/12/14

13:30

S8

Workshop registration opens.

DF, DS, KA

14:00

S8

Opening and introductions

DF

14:30

S8

L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week

Slides

DF

15:30

S9

Tea/coffee

16:00

S8

L2. Sources of data for metabolic models

Slides

DF

17:00

S9

P1. Computers: checking internet connectivity, software installation. Enzyme and metabolism databases.

Installation of ScrumPy. Database Instructions

DF, MP, DS, KA,TK

18:30

Room registration (cont)

19:00

S9

Opening reception

19:30

S9

Dinner

Tuesday

08:00

Hall

Breakfast

16/12/14

09:00

S8

L3. Null space and elementary modes

Slides

DF

10:00

L4. Computational representation of metabolic networks

Slides

MP

10:30

S9

Coffee/Tea

11:00

S8

P2. Python and ScrumPy

Instructions

MP, DF, DS, TK

12:30

S9

Lunch

13:30

S8

L5. Biotechnological applications of metabolic network analysis

Slides

DF

14:30

S8

P3. Null space analysis with ScrumPy

As P2 plus these instructions

DF, HH, DS, TK

15:30

S9

Tea/Coffee

16:00

S8

L6. Linear Programming and Flux Balance Analysis

Slides

HH

17:00

S8

P2 and P3 continued

17:30

Close

19:00

S9

Dinner

Wednesday

08:00

Hall

Breakfast

17/12/14

09:00

S8

L7. Building genome-scale metabolic networks

Slides

MP

10:30

S9

Coffee/Tea

11:00

S8

P4. Elementary modes of a simple model

Instructions

MP, DF, KA

12:30

S9

Lunch + Oxford walking tour

14:30

S8

L8. Examples of analyzing genome scale metabolic models

Slides

MP or DF

15:00

S8

P5. Building models from MetaCyc with ScrumPy – group work

Instructions

MP, DF, HH, KA

15:30

S9

Tea/Coffee

17:00

S8

P5 continued

MP, DF, HH, KA

18:00

Close

19:00

S9

Dinner (changed back to S9)

Thursday

08:00

Hall

Breakfast

18/12/14

09:00

S8

L9. Examples of genome scale modelling

Slides

DS KA

10:30

S9

Coffee/Tea

11:00

S8

P6. Flux Balance Analysis of a simple model

Instructions

DF, KA, DS

12:30

S9

Lunch

13:30

S8

L10. Modelling energy metabolism in Salmonella

Slides

HH

14:30

S8

P7 (Group work) Analysing a genome scale model of Salmonella

Instructions

DF, MP, DS, KA

15:30

S9

Tea/Coffee

16:00

S8

P7 continued

DF, MP, DS, KA

17:30

Close

18:30

S9

Pre-dinner drinks

19:00

S9

Workshop dinner with cash bar

Friday

08:00

Hall

Breakfast

19/12/14

09:00

S8

P7 continued

DF, MP, HH, DS, KA

10:30

S9

Coffee/Tea

11:00

S8

Reports from groups

DF, MP, HH, DS, KA

12:00

S8

Any questions? Closing remarks

DF

12:30

S9

Sandwich lunch (packed)

13:30

Departure

None: Meetings/C1netWork1/Plan (last edited 2014-12-18 15:45:40 by david)