C1Net Workshop on Metabolic Modelling
Course Plan and Resources Index
Day |
Time |
Activity |
Resources |
Who |
Mon 15 |
13:30 |
Session 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. Null space and its significance. |
A link. |
David Fell; Mark Poolman |
Mon 15 |
PM |
Practical 1: Familiarisation with pathway and enzyme databases. |
|
Hassan Hartman |
Tue 16 |
AM |
Session 2: Applications of elementary modes to real systems. |
|
David Fell; Sudip Kundu |
Tue 16 |
PM |
Practical 2: Brief Python introduction; Null space and elementary modes analysis with ScrumPy |
|
Hassan Hartman; Sudip Kundu |
Wed 17 |
AM |
Session 3: Linear Programming and Flux Balance Analysis. Building genome-scale metabolic models: data sources and issues. |
|
Mark Poolman; Oliver Ebenhoeh |
Wed 17 |
PM |
Practical 3: Introduction to linear programming and Flux Balance Analysis with ScrumPy |
|
Hassan Hartman; Sudip Kundu |
Thu 18 |
AM |
Session 4: Applications of genome-scale modelling. |
|
Mark Poolman; Oliver Ebenhoeh; Sudip Kundu |
Thu 18 |
PM |
Practical 4: FBA continued |
|
Hassan Hartman; Sudip Kundu |
Fri 19 |
AM |
Session 5: 1. Metabolic scope 2. Review and Conclusions |
|
Oliver Ebenhoeh; All |