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[[Meetings/Delhi2012/Timetable |Timetable ]] [[Meetings/Delhi2012/Lectures | Lectures]] [[Meetings/Delhi2012/Practicals | Practicals]] = Practical 2 = == Introduction to Python == == Introduction to ScrumPy == == Elementary modes analysis == = Practical 3 = == Introduction to Flux Balance Analysis in ScrumPy == = Practical 3 = == Flux Balance Analysis in ScrumPy (continued) == |
Delhi Workshop on Metabolic Modelling 2012
Important note to students
Not all details here are yet finalised, so do check back regularly.
Timetable
Time |
Activity |
Who |
Mon 15th, AM |
Session 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. Null space and it's significance. |
David Fell; Mark Poolman |
Mon 15th, PM |
Practical 1: Familiarisation with pathway and enzyme databases. |
Hassan Hartman |
Tue 16th, AM |
Session 2: Null spce and elementary modes. Applications of elementary modes to real systems. |
David Fell; Mark Poolman; Sudip Kundu |
Tue 16th, PM |
Practical 2: Brief Python introduction; Elementary modes analysis |
Hassan Hartman; Sudip Kundu |
Wed 17th, AM |
Session 3: Linear Programming and Flux Balance Analysis. Building genome-scale metabolic models: data sources and issues. |
Mark Poolman; Oliver Ebenhoeh |
Wed 17th, PM |
Practical 3: Intro to FBA with ScrumPy |
Hassan Hartman; Sudip Kundu |
Thu 18th, AM |
Session 4: Applications of genome-scale modelling and/or metabolic scope |
Mark Poolman; Oliver Ebenhoeh; Sudip Kundu |
Thu 18th, PM |
Practical 4: FBA continued and/or metabolic scope |
Hassan Hartman; Sudip Kundu |
Fri 19th, AM |
Session 5: 1. Metabolic scope (if not in session 4). 2. Review and Conclusions |
Oliver Ebenhoeh; All |
Fri 19th, AM |
Practical 5: Metabolic scope |
Oliver Ebenhoeh |