Self

Delhi Workshop on Metabolic Modelling 2012

This is an activity of the collaborative project Development of Metabolic Models to Support Systems Biology Approaches to Bioenergy Research

About the Workshop

Why here? Why now? Download some introductory slides (pdf).

Mark can be contacted on mgpoolman AT brookes.ac.uk

Timetable

Student Contributions

The last hour of the first four morning sessions will be given over to student presentations. Students will be informed later as to the exact timetabling of their talks.

Time

Activity

Who

Mon 15th, AM

Session 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. Null space and its significance.

David Fell; Mark Poolman

Mon 15th, PM

Practical 1: Familiarisation with pathway and enzyme databases.

Hassan Hartman

Tue 16th, AM

Session 2: Applications of elementary modes to real systems.

David Fell; Sudip Kundu

Tue 16th, PM

Practical 2: Brief Python introduction; Null space and elementary modes analysis with ScrumPy

Hassan Hartman; Sudip Kundu

Wed 17th, AM

Session 3: Linear Programming and Flux Balance Analysis. Building genome-scale metabolic models: data sources and issues.

Mark Poolman; Oliver Ebenhoeh

Wed 17th, PM

Practical 3: Introduction to linear programming and Flux Balance Analysis with ScrumPy

Hassan Hartman; Sudip Kundu

Thu 18th, AM

Session 4: Applications of genome-scale modelling.

Mark Poolman; Oliver Ebenhoeh; Sudip Kundu

Thu 18th, PM

Practical 4: FBA continued

Hassan Hartman; Sudip Kundu

Fri 19th, AM

Session 5: 1. Metabolic scope 2. Review and Conclusions

Oliver Ebenhoeh; All

After the workshop

See the photographic record

None: Meetings/Delhi2012 (last edited 2012-10-30 13:10:07 by mark)