MetaMod 2016
Metabolic Modelling Workshop, NCL, Pune
14-16 March 2016
Download the Virtualbox image and import it into virtual box (File/Import appliance). There is single user with the id 'scrumpy' with the password 'scrumpy'. 'scrumpy' is also the root password. This image is for pre-workshop testing and may well change!
Follow this link if you wish to install ScrumPy on a Linux computer.
Timetable (Subject to Change)
Mornings, 9:30 -12:30 (Monday 11:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)
Day |
Time |
Activity |
Resources |
Who |
Mon 14th, AM |
11:00 |
Registration and admin |
|
|
11:20 |
Welcome Talk |
|
Anu + Mark |
|
11:30 |
Talk: Introductory theory |
Mark |
||
12:30 |
Lunch |
|
All |
|
Mon 14th, PM |
14:00 |
Talk: Python, object-orientation and models. |
Mark |
|
15:00 |
Practical 0: Checking ScrumPy Installation and Familiarisation |
All |
||
17:00 |
Close |
|
|
|
Tue 15th, AM |
09:30 |
Talk: Structural analysis of small models. |
David |
|
10:30 |
Practical 1: Structural analysis of small models |
All |
||
12:30 |
Lunch |
|
|
|
Tue 15th, PM |
14:00 |
Talk: Algorithms for calculating Elementary Modes |
Hassan |
|
15:00 |
Talk: Linear Programming and Genome Scale Models |
Mark |
||
16:00 |
Practical 1: (continued) |
All |
||
17:00 |
Close |
|
|
|
Wed 16th, AM |
09:30 |
Talk: Biotechnological Applications of Metabolic Network Analysis |
David |
|
10:30 |
Talk: Analysis of GSMs - Novel antibiotic targets |
Hassan |
||
11:30 |
Practical 2: Identifying Novel Antibiotic Targets in Salmonella |
|
||
12:30 |
Lunch |
|
|
|
Wed 16th, PM |
14:00 |
Practical 2: (continued) |
|
|
15:30 |
Talk: Metabolic engineering of Geobacillus |
Hassan |
||
16:30 |
Concluding remarks and presentation of certificates |
|
|
|
17:00 |
Close |
|
|