Differences between revisions 16 and 32 (spanning 16 versions)
⇤ ← Revision 16 as of 2013-09-01 13:16:34 →
Size: 4527
Editor: hassan
Comment:
← Revision 32 as of 2013-09-12 20:32:45 → ⇥
Size: 4486
Editor: mark
Comment:
Deletions are marked like this. Additions are marked like this.
Line 1: Line 1:
== Under Construction ==
The table below will contain links to course material as it becomes available. as long as the "Under Construction" heading is shown, these materials should be assumed to be incomplete, but you are welcome to read them anyway.		 === Notes ===
 1.
 Please follow [[Meetings/Riga2013/Practicals/ScrumPyVM|these instructions]] to install ScrumPy on your lap-top, before you arrive in Oxford.
Line 4: Line 5:
=== Notes ===
 1. Please follow [[Meetings/Riga2013/Practicals/ScrumPyVM|these instructions]] to install ScrumPy on your lap-top, before you arrive in Oxford.
Line 7: Line 6:
 1. Teaching materials linked in the time-table below are subject to change, however, the core content will stay the same.
Line 10: Line 10:
 1. Students should work independently as far as possible. Of course, discussion with your colleagues is expected and encouraged, but make sure ''you'' do the work on ''your'' computer.  1.
 Students should work independently as far as possible. Of course, discussion with your colleagues is expected and encouraged, but make sure ''you'' do the work on ''your'' computer.
Line 13: Line 14:
||<tablewidth="1188px" tableheight="216px"style="font-size:12pt;                 ;text-align:center;vertical-align:bottom">'''Session''' ||<style="font-size:12pt;                 ;text-align:center;vertical-align:bottom">'''Mon''' ||<style="font-size:12pt;                 ;text-align:center;vertical-align:bottom">'''Tue''' ||<style="font-size:12pt;                 ;text-align:center;vertical-align:bottom">'''Wed''' ||<style="font-size:12pt;                 ;text-align:center;vertical-align:bottom">'''Thur''' ||<style="font-size:12pt;                 ;text-align:center;vertical-align:bottom">'''Fri''' ||
||<style="font-size:10pt;                 ;text-align:center;vertical-align:bottom">'''1''' ||<style="font-size:10pt;                 ;text-align:center">Complementary skills ||<style="font-size:10pt;                 ;text-align:center">Complementary skills ||<style="font-size:10pt;                 ;text-align:center">Mathematical principles of metabolic network analysis (CS) ||<style="font-size:10pt;                 ;text-align:center">Linear Programming and Flux Balance Analysis of metabolic networks (OE) ||||<style="font-size:10pt;                 ;text-align:center">Modelling photosynthesis in Rice (MP) ||
||<style="font-size:10pt;                 ;text-align:center;vertical-align:bottom">'''2''' ||<style="font-size:10pt;                 ;text-align:center">Complementary skills ||<style="font-size:10pt;                 ;text-align:center">Complementary skills ||<style="font-size:10pt;                 ;text-align:center">Metabolic nework analysis of eukaryotic photosynthesis (MP) ||<style="font-size:10pt;                 ;text-align:center">EMs, (SSs ?) LP and FBA with Python and ScrumPy + Q&A (MP) ||||<style="font-size:10pt;                 ;text-align:center">Modelling energy metabolism            in ''Salmonella ''(HH) ||
||<style="font-size:10pt;                 ;text-align:center;vertical-align:bottom">'''Lunch''' ||<style="font-size:10pt;                 ;text-align:center"> || || || || ||
||<style="font-size:10pt;                 ;text-align:center;vertical-align:bottom">'''3''' ||<style="font-size:10pt;                 ;text-align:center">Complementary skills ||<style="font-size:10pt;                 ;text-align:center">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/TueSes3.pdf|Mathematical representations of metabolic networks, (DF)]] ||<style="font-size:10pt;                 ;text-align:center">Biotechnological applications of metabolic network analysis (DF) ||<style="font-size:10pt;                 ;text-align:center">'''Practical '''- Elementary modes             of photosynthesis ||||||<style="font-size:10pt;                 ;text-align:center">'''Practical '''- FBA on small models ||
||<style="font-size:10pt;                 ;text-align:center;vertical-align:bottom">'''4''' ||<style="font-size:10pt;                 ;text-align:center">Complementary skills ||<style="font-size:10pt;                 ;text-align:center">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/TueSes4.pdf|Computational representation of metabolic networks. (MP)]] ||<style="font-size:10pt;                 ;text-align:center">[[AccliPhot/WorkshopOne/prac1|Practical - Python and ScrumPy]] ||<style="font-size:10pt;                 ;text-align:center">'''Practical '''- Elementary modes            of photosynthesis (ctd.) ||||||<style="font-size:10pt;                 ;text-align:center">'''Practical''' - FBA on genome-scale models ||		 ||<tablewidth="1188px" tableheight="216px"style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Session''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Mon''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Tue''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Wed''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Thur''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Fri''' ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''1''' ||<style="font-size:10pt;text-align:center;">Complementary skills ||<style="font-size:10pt;text-align:center;">Complementary skills ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/WedSes1.pdf|Mathematical principles of metabolic network analysis (CS)]] [[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/WedSes2notes.pdf|Notes]] ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/ThurSes1.pdf|Linear Programming and Flux Balance Analysis of metabolic networks (OE)]] ||||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/FriSes1.pdf|Modelling photosynthesis in Rice (MP)]] ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''2''' ||<style="font-size:10pt;text-align:center;">Complementary skills ||<style="font-size:10pt;text-align:center;">Complementary skills ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/WedSes2.pdf|Metabolic nework analysis of eukaryotic photosynthesis (MP)]] ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/ThurSes2.pdf|Metabolic Network Analysis with ScrumPy (MP)]] ||||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/FriSes2.pdf|Modelling energy metabolism in Salmonella (HH)]] ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''Lunch''' ||<style="font-size:10pt;text-align:center;"> || || || || ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''3''' ||<style="font-size:10pt;text-align:center;">Complementary skills ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/TueSes3.pdf|Mathematical representations of metabolic networks, (DF)]] ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/WedSes3.pdf|Biotechnological applications of metabolic network analysis (DF)]] ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopOne/prac2|Practical - Elementary modes of photosynthesis]] ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopOne/prac3|Practical - FBA on small models]] ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''4''' ||<style="font-size:10pt;text-align:center;">Complementary skills ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/TueSes4.pdf|Computational representation of metabolic networks. (MP)]] ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopOne/prac1|Practical - Python and ScrumPy]] ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopOne/prac2|Practical- Elementary modes of photosynthesis (ctd.)]] ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopOne/prac4|Practical - FBA on genome-scale models]] ||

Notes

  1. Please follow these instructions to install ScrumPy on your lap-top, before you arrive in Oxford.

  2. Teaching materials linked in the time-table below are subject to change, however, the core content will stay the same.
  3. There is a certain ammount of lee-way built into the timing of the practicals. Do not be alarmed if you do not complete a given practical by the end of the slot - simply pick up from where you left off in the next one.

  4. Students should work independently as far as possible. Of course, discussion with your colleagues is expected and encouraged, but make sure you do the work on your computer.

Session

Mon

Tue

Wed

Thur

Fri

1

Complementary skills

Complementary skills

Mathematical principles of metabolic network analysis (CS) Notes

Linear Programming and Flux Balance Analysis of metabolic networks (OE)

Modelling photosynthesis in Rice (MP)

2

Complementary skills

Complementary skills

Metabolic nework analysis of eukaryotic photosynthesis (MP)

Metabolic Network Analysis with ScrumPy (MP)

Modelling energy metabolism in Salmonella (HH)

Lunch

3

Complementary skills

Mathematical representations of metabolic networks, (DF)

Biotechnological applications of metabolic network analysis (DF)

Practical - Elementary modes of photosynthesis

Practical - FBA on small models

4

Complementary skills

Computational representation of metabolic networks. (MP)

Practical - Python and ScrumPy

Practical- Elementary modes of photosynthesis (ctd.)

Practical - FBA on genome-scale models

None: AccliPhot/WorkshopOne (last edited 2013-10-29 12:41:35 by mark)