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| == Under Construction == | === Notes === 1. Please follow [[Meetings/Riga2013/Practicals/ScrumPyVM|these instructions]] to install ScrumPy on your lap-top, before you arrive in Oxford. |
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| ||<:v style=" font-size:12pt;">'''Session'''||<:v style=" font-size:12pt;">'''Mon'''||<:v style=" font-size:12pt;">'''Tue'''||<:v style=" font-size:12pt;">'''Wed'''||<:v style=" font-size:12pt;">'''Thur'''||<:v style=" font-size:12pt;">'''Fri'''||<style=""> ||<style=""> || ||<:v style=" font-size:10pt;">'''1'''||<:: style=" font-size:10pt;">Complementary skills||<:: style=" font-size:10pt;">Complementary skills||<:: style=" font-size:10pt;">Mathematical principles of<<BR>> metabolic network analysis (CS)||<:: style=" font-size:10pt;">Linear Programming and Flux Balance <<BR>> Analysis of metabolic networks (OE)||||<style=" font-size:10pt;">Modelling photosynthesis<<BR>> in Rice (MP)||<style=""> || ||<:v style=" font-size:10pt;">'''2'''||<:: style=" font-size:10pt;">Complementary skills||<:: style=" font-size:10pt;">Complementary skills||<:: style=" font-size:10pt;">Metabolic nework analysis of <<BR>> eukaryotic photosynthesis (MP)||<:: style=" font-size:10pt;">LP and FBA with Python and<<BR>> ScrumPy (MP)||||<style=" font-size:10pt;">Modelling energy metabolism<<BR>> in ''Salmonella ''(HH)||<style=""> || ||<:v style=" font-size:10pt;">'''Lunch'''||<:: style=" font-size:10pt;"> ||<style=""> ||<style=""> ||<style=""> ||<style=""> ||<style=""> ||<style=""> || ||<:v style=" font-size:10pt;">'''3'''||<:: style=" font-size:10pt;">Complementary skills||<:: style=" font-size:10pt;">Mathematical representations <<BR>> of metabolic networks, (DF)||<:: style=" font-size:10pt;">Biotechnological applications of<<BR>> metabolic network analysis (DF)||<:: style=" font-size:10pt;">'''Practical '''- Elementary modes <<BR>> of photosynthesis||||||<style=" font-size:10pt;">'''Practical '''- FBA on small models|| ||<:v style=" font-size:10pt;">'''4'''||<:: style=" font-size:10pt;">Complementary skills||<:: style=" font-size:10pt;">Computational representation<<BR>> of metabolic networks. (MP)||<:: style=" font-size:10pt;">'''Practical''' - Python and ScrumPy||<:: style=" font-size:10pt;">'''Practical '''- Elementary modes <<BR>> of photosynthesis (ctd.)||||||<style=" font-size:10pt;">'''Practical''' - FBA on genome-scale <<BR>> models|| |
1. Teaching materials linked in the time-table below are subject to change, however, the core content will stay the same. 1. There is a certain ammount of lee-way built into the timing of the practicals. Do not be alarmed if you do not complete a given practical by the end of the slot - simply pick up from where you left off in the next one. 1. Students should work independently as far as possible. Of course, discussion with your colleagues is expected and encouraged, but make sure ''you'' do the work on ''your'' computer. ||<tablewidth="1188px" tableheight="216px"style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Session''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Mon''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Tue''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Wed''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Thur''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Fri''' || ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''1''' ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/MonSes3.pdf|Complementary Skills]] ||<style="font-size:10pt;text-align:center;">Complementary skills ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/WedSes1.pdf|Mathematical principles of metabolic network analysis (CS)]] [[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/WedSes1notes.pdf|Notes]] ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/ThurSes1.pdf|Linear Programming and Flux Balance Analysis of metabolic networks (OE)]] ||||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/FriSes1.pdf|Modelling photosynthesis in Rice (MP)]] || ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''2''' ||<style="font-size:10pt;text-align:center;">Complementary skills ||<style="font-size:10pt;text-align:center;">Complementary skills ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/WedSes2.pdf|Metabolic nework analysis of eukaryotic photosynthesis (MP)]] ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/ThurSes2.pdf|Metabolic Network Analysis with ScrumPy (MP)]] ||||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/FriSes2.pdf|Modelling energy metabolism in Salmonella (HH)]] || ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''Lunch''' ||<style="font-size:10pt;text-align:center;"> || || || || || ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''3''' ||<style="font-size:10pt;text-align:center;">Complementary skills ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/TueSes3.pdf|Mathematical representations of metabolic networks, (DF)]] ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/WedSes3.pdf|Biotechnological applications of metabolic network analysis (DF)]] ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopOne/prac2|Practical - Elementary modes of photosynthesis]] ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopOne/prac3|Practical - FBA on small models]] || ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''4''' ||<style="font-size:10pt;text-align:center;">Complementary skills ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop1/TueSes4.pdf|Computational representation of metabolic networks. (MP)]] ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopOne/prac1|Practical - Python and ScrumPy]] ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopOne/prac2|Practical- Elementary modes of photosynthesis (ctd.)]] ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopOne/prac4|Practical - FBA on genome-scale models]] || |
Notes
Please follow these instructions to install ScrumPy on your lap-top, before you arrive in Oxford.
- Teaching materials linked in the time-table below are subject to change, however, the core content will stay the same.
- There is a certain ammount of lee-way built into the timing of the practicals. Do not be alarmed if you do not complete a given practical by the end of the slot - simply pick up from where you left off in the next one.
Students should work independently as far as possible. Of course, discussion with your colleagues is expected and encouraged, but make sure you do the work on your computer.
Session |
Mon |
Tue |
Wed |
Thur |
Fri |
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1 |
Complementary skills |
Mathematical principles of metabolic network analysis (CS) Notes |
Linear Programming and Flux Balance Analysis of metabolic networks (OE) |
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2 |
Complementary skills |
Complementary skills |
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Lunch |
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3 |
Complementary skills |
Biotechnological applications of metabolic network analysis (DF) |
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4 |
Complementary skills |
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