Diff for "AccliPhot/WorkshopTwo" - Cell Systems Modelling Group

Differences between revisions 1 and 11 (spanning 10 versions)

Notes

The timetable is currently a draft and subject to change, although the topics will stay substantially the same.
Please revise the material fromworkshop 1 before arriving, and bring your laptop with ScrumPy installed.
Material for the sessions will appear as links in the timetable, feel free to browse them as they become available, but be aware that some details may change.
The workshop will run from 0900-1700, timings of individual sessions are likely to vary.

Session	Mon	Tue	Wed	Thur	Fri
1	Recap of Structural Modelling (MP)	Theory of Kinetic Modelling (OE)	Theory of Metabolic Control Analysis (OE)	A Kinetic Model of the Calvin Cycle (MP)	To be confirmed (A.N. Other)
2	Modelling Phaeodactylum (Dipali)	Modelling Arabidopsis and Chlamydomonas (Kailash)	Modelling the Light Reactions (Anna)	Modelling Bioreactors (Brieuc)	Modelling Chloroplast Signalling (Antonella)
Lunch
3	Recap of Python and ScrumPy	Construction and Analysis of Kinetic Models With ScrumPy	Kinetic Modelling Practical 2 Metabolic Control Analysis	Kinetic Modelling Practical 3 Modelling the Calvin Cycle	Any Other Business
4	Moin software for the Accliphot wiki	Kinetic Modelling Practical 1	Kinetic Modelling Practical 2Metabolic Control Analysis	Kinetic Modelling Practical 3 Modelling the Calvin Cycle	Group Discussion

-  ⇤ ← Revision 1 as of 2014-07-23 10:39:19 → 
  Size: 3507
  Editor: mark
  Comment:
+   ← Revision 11 as of 2014-09-07 12:01:19 → ⇥
  Size: 3721
  Editor: mark
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 3:
- Please follow [[http://mudshark.brookes.ac.uk/Meetings/Riga2013/Practicals/ScrumPyVM|these instructions]] to install [[http://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]] on your lap-top, before you arrive in Oxford.
+ '''The timetable is currently a draft and subject to change, although the topics will stay substantially the same.    '''
 Line 6:
-. Teaching materials linked in the time-table below are subject to change, however, the core content will stay the same.

 1. There  is a certain ammount of lee-way built into the timing of the  practicals. Do not be alarmed if you do not complete a given practical  by the end of the slot - simply pick up from where you left off in the  next one.
-Line 11:
+Line 7:
- Students  should work independently as far as possible. Of course, discussion  with your colleagues is expected and encouraged, but make sure ''you'' do the work on ''your'' computer.
+ Please revise the material from[[AccliPhot/WorkshopOne|workshop 1]] before arriving, and bring your laptop with ScrumPy installed.
-Line 14:
+Line 10:
+. Material for the sessions will appear as links in the timetable, feel free to browse them as they become available, but be aware that some details may change.
-Line 15:
+Line 12:
-||<tablestyle="width: 1188px; height: 216px"style="font-size:12pt; text-align:center; vertical-align:bottom;">'''Session''' ||<style="font-size:12pt; text-align:center; vertical-align:bottom;">'''Mon''' ||<style="font-size:12pt; text-align:center; vertical-align:bottom;">'''Tue''' ||<style="font-size:12pt; text-align:center; vertical-align:bottom;">'''Wed''' ||<style="font-size:12pt; text-align:center; vertical-align:bottom;">'''Thur''' ||<style="font-size:12pt; text-align:center; vertical-align:bottom;">'''Fri''' ||
||<style="font-size:10pt; text-align:center; vertical-align:bottom;">'''1''' ||<style="font-size:10pt; text-align:center;">Recap of Structural Modelling ||<style="font-size:10pt; text-align:center;">Theory of Kinetic Modelling ||<style="font-size:10pt; text-align:center;">Theory of Metabolic Control Analysis ||<style="font-size:10pt; text-align:center;">A Kinetic Model of the Calvin Cycle ||||<style="font-size:10pt; text-align:center;">Any Other Business ||
||<style="font-size:10pt; text-align:center; vertical-align:bottom;">'''2''' ||<style="font-size:10pt; text-align:center;">Modelling Phaeodactylum||<style="font-size:10pt; text-align:center;">Modelling Arabidopsis and Chlamydomonas ||<style="font-size:10pt; text-align:center;">Modelling the Light Reactions ||<style="font-size:10pt; text-align:center;">Modelling Bioreactors ||||<style="font-size:10pt; text-align:center;">Group Discussion ||
||<style="font-size:10pt; text-align:center; vertical-align:bottom;">'''Lunch''' ||<style="font-size:10pt; text-align:center;">                        ||                        ||                        ||                        ||                        ||
||<style="font-size:10pt; text-align:center; vertical-align:bottom;">'''3''' ||<style="font-size:10pt; text-align:center;">Recap and update of the ScrumPy software ||<style="font-size:10pt; text-align:center;">Kinetic Modelling Practical 1 ||<style="font-size:10pt; text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt; text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt; text-align:center;">Social Event ||
||<style="font-size:10pt; text-align:center; vertical-align:bottom;">'''4''' ||<style="font-size:10pt; text-align:center;">Moin software for the Accliphot wiki ||<style="font-size:10pt; text-align:center;">Kinetic Modelling Practical 1 ||<style="font-size:10pt; text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt; text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt; text-align:center;">Social Event ||
+. The workshop will run from 0900-1700, timings of individual sessions are likely to vary.
-Line 22:
+Line 14:
+||<tablewidth="1188px" tableheight="216px"style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Session''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Mon''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Tue''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Wed''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Thur''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Fri''' ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''1''' ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop2/Slides/RecapStrM/Slides.pdf|Recap of Structural Modelling (MP)]] ||<style="font-size:10pt;text-align:center;">Theory of Kinetic Modelling (OE) ||<style="font-size:10pt;text-align:center;">Theory of Metabolic Control Analysis (OE) ||<style="font-size:10pt;text-align:center;">A Kinetic Model of the Calvin Cycle (MP) ||||<style="font-size:10pt;text-align:center;">To be confirmed (A.N. Other) ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''2''' ||<style="font-size:10pt;text-align:center;">Modelling Phaeodactylum (Dipali) ||<style="font-size:10pt;text-align:center;">Modelling Arabidopsis and Chlamydomonas (Kailash) ||<style="font-size:10pt;text-align:center;">Modelling the Light Reactions (Anna) ||<style="font-size:10pt;text-align:center;">Modelling Bioreactors (Brieuc) ||||<style="font-size:10pt;text-align:center;">Modelling Chloroplast Signalling (Antonella) ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''Lunch''' ||<style="font-size:10pt;text-align:center;">                        ||                        ||                        ||                        ||                        ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''3''' ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop2/Slides/RecapStrM/Slides.pdf|Recap of Python and ScrumPy]] ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Tue_3|Construction and Analysis of Kinetic Models With ScrumPy]] ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkShopTwo/AOB|Any Other Business]] ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''4''' ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Moin|Moin software for the Accliphot wiki]] ||<style="font-size:10pt;text-align:center;">[[Accliphot/WorkshopTwo//Practical_1|Kinetic Modelling Practical 1]] ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Practical_2|Kinetic Modelling Practical 2]]Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/GeneralDisc|Group Discussion]] ||