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Please follow [[http://mudshark.brookes.ac.uk/Meetings/Riga2013/Practicals/ScrumPyVM|these instructions]] to install [[http://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]] on your lap-top, before you arrive in Oxford. | '''The timetable is currently a draft and subject to change, although the topics will stay substantially the same. ''' |
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1. Teaching materials linked in the time-table below are subject to change, however, the core content will stay the same. 1. There is a certain ammount of lee-way built into the timing of the practicals. Do not be alarmed if you do not complete a given practical by the end of the slot - simply pick up from where you left off in the next one. |
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Students should work independently as far as possible. Of course, discussion with your colleagues is expected and encouraged, but make sure ''you'' do the work on ''your'' computer. | Please revise the material from[[AccliPhot/WorkshopOne|workshop 1]] before arriving, and bring your laptop with ScrumPy installed. |
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1. Material for the sessions will appear as links in the timetable, feel free to browse them as they become available, but be aware that some details may change. | |
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||<tablestyle="width: 1188px; height: 216px"style="font-size:12pt; text-align:center; vertical-align:bottom;">'''Session''' ||<style="font-size:12pt; text-align:center; vertical-align:bottom;">'''Mon''' ||<style="font-size:12pt; text-align:center; vertical-align:bottom;">'''Tue''' ||<style="font-size:12pt; text-align:center; vertical-align:bottom;">'''Wed''' ||<style="font-size:12pt; text-align:center; vertical-align:bottom;">'''Thur''' ||<style="font-size:12pt; text-align:center; vertical-align:bottom;">'''Fri''' || ||<style="font-size:10pt; text-align:center; vertical-align:bottom;">'''1''' ||<style="font-size:10pt; text-align:center;">Recap of Structural Modelling ||<style="font-size:10pt; text-align:center;">Theory of Kinetic Modelling ||<style="font-size:10pt; text-align:center;">Theory of Metabolic Control Analysis ||<style="font-size:10pt; text-align:center;">A Kinetic Model of the Calvin Cycle ||||<style="font-size:10pt; text-align:center;">Any Other Business || ||<style="font-size:10pt; text-align:center; vertical-align:bottom;">'''2''' ||<style="font-size:10pt; text-align:center;">Modelling Phaeodactylum||<style="font-size:10pt; text-align:center;">Modelling Arabidopsis and Chlamydomonas ||<style="font-size:10pt; text-align:center;">Modelling the Light Reactions ||<style="font-size:10pt; text-align:center;">Modelling Bioreactors ||||<style="font-size:10pt; text-align:center;">Group Discussion || ||<style="font-size:10pt; text-align:center; vertical-align:bottom;">'''Lunch''' ||<style="font-size:10pt; text-align:center;"> || || || || || ||<style="font-size:10pt; text-align:center; vertical-align:bottom;">'''3''' ||<style="font-size:10pt; text-align:center;">Recap and update of the ScrumPy software ||<style="font-size:10pt; text-align:center;">Kinetic Modelling Practical 1 ||<style="font-size:10pt; text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt; text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt; text-align:center;">Social Event || ||<style="font-size:10pt; text-align:center; vertical-align:bottom;">'''4''' ||<style="font-size:10pt; text-align:center;">Moin software for the Accliphot wiki ||<style="font-size:10pt; text-align:center;">Kinetic Modelling Practical 1 ||<style="font-size:10pt; text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt; text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt; text-align:center;">Social Event || |
1. The workshop will run from 0900-1700, timings of individual sessions are likely to vary. |
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||<tablewidth="1188px" tableheight="216px"style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Session''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Mon''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Tue''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Wed''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Thur''' ||<style="font-size:12pt;text-align:center;vertical-align:bottom;">'''Fri''' || ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''1''' ||<style="font-size:10pt;text-align:center;">Recap of Structural Modelling (MP) ||<style="font-size:10pt;text-align:center;">Theory of Kinetic Modelling (OE) ||<style="font-size:10pt;text-align:center;">Theory of Metabolic Control Analysis (OE) ||<style="font-size:10pt;text-align:center;">A Kinetic Model of the Calvin Cycle (MP) ||||<style="font-size:10pt;text-align:center;">To be confirmed (A.N. Other) || ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''2''' ||<style="font-size:10pt;text-align:center;">Modelling Phaeodactylum (Dipali) ||<style="font-size:10pt;text-align:center;">Modelling Arabidopsis and Chlamydomonas (Kailash) ||<style="font-size:10pt;text-align:center;">Modelling the Light Reactions (Anna) ||<style="font-size:10pt;text-align:center;">Modelling Bioreactors (Brieuc) ||||<style="font-size:10pt;text-align:center;">Modelling Chloroplast Signalling (Antonella) || ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''Lunch''' ||<style="font-size:10pt;text-align:center;"> || || || || || ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''3''' ||<style="font-size:10pt;text-align:center;">Recap and update of the ScrumPy software ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Tue_3|Construction and Analysis of Kinetic Models With ScrumPy]] ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkShopTwo/AOB|Any Other Business]] || ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''4''' ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Moin|Moin software for the Accliphot wiki]] ||<style="font-size:10pt;text-align:center;">[[Accliphot/WorkshopTwo//Practical_1|Kinetic Modelling Practical 1]] ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/GeneralDisc|Group Discussion]] || |
Notes
The timetable is currently a draft and subject to change, although the topics will stay substantially the same.
Please revise the material fromworkshop 1 before arriving, and bring your laptop with ScrumPy installed.
- Material for the sessions will appear as links in the timetable, feel free to browse them as they become available, but be aware that some details may change.
- The workshop will run from 0900-1700, timings of individual sessions are likely to vary.
Session |
Mon |
Tue |
Wed |
Thur |
Fri |
||
1 |
Recap of Structural Modelling (MP) |
Theory of Kinetic Modelling (OE) |
Theory of Metabolic Control Analysis (OE) |
A Kinetic Model of the Calvin Cycle (MP) |
To be confirmed (A.N. Other) |
||
2 |
Modelling Phaeodactylum (Dipali) |
Modelling Arabidopsis and Chlamydomonas (Kailash) |
Modelling the Light Reactions (Anna) |
Modelling Bioreactors (Brieuc) |
Modelling Chloroplast Signalling (Antonella) |
||
Lunch |
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3 |
Recap and update of the ScrumPy software |
Kinetic Modelling Practical 2 Metabolic Control Analysis |
Kinetic Modelling Practical 3 Modelling the Calvin Cycle |
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4 |
Kinetic Modelling Practical 2 Metabolic Control Analysis |
Kinetic Modelling Practical 3 Modelling the Calvin Cycle |