Diff for "AccliPhot/WorkshopTwo" - Cell Systems Modelling Group

Differences between revisions 10 and 18 (spanning 8 versions)

Notes

Please revise the material fromworkshop 1 before arriving, and bring your laptop with ScrumPy installed.
Material for the sessions will appear as links in the timetable, feel free to browse them as they become available, but be aware that some details may change.
The workshop will run from 0900-1700, timings of individual sessions are likely to vary.

Session	Mon	Tue	Wed	Thur	Fri
1	Recap of Structural Modelling (MP)	Theory of Kinetic Modelling (OE)	Theory of Metabolic Control Analysis (OE)	A Kinetic Model of the Calvin Cycle(MP)	To be confirmed (A.N. Other)
2	Modelling Phaeodactylum (Dipali)	Modelling Arabidopsis and Chlamydomonas (Kailash)	Modelling the Light Reactions (Anna)	Modelling Bioreactors (Brieuc)	Modelling Chloroplast Signalling (Antonella)
Lunch
3	Recap of Python and ScrumPy	Construction and Analysis of Kinetic Models With ScrumPy	Kinetic Modelling Practical 2 Metabolic Control Analysis	Kinetic Modelling Practical 3 Modelling the Calvin Cycle	Group Discussion
4	Moin software for the Accliphot wiki	Kinetic Modelling Practical 1	Kinetic Modelling Practical 2 Metabolic Control Analysis	Kinetic Modelling Practical 3 Modelling the Calvin Cycle	Any Other Business

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 '''The timetable is currently a draft and subject to change, although the topics will stay substantially the same.    '''
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-||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''1''' ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop2/Slides/RecapStrM/Slides.pdf|Recap of Structural Modelling (MP)]] ||<style="font-size:10pt;text-align:center;">Theory of Kinetic Modelling (OE) ||<style="font-size:10pt;text-align:center;">Theory of Metabolic Control Analysis (OE) ||<style="font-size:10pt;text-align:center;">A Kinetic Model of the Calvin Cycle (MP) ||||<style="font-size:10pt;text-align:center;">To be confirmed (A.N. Other) ||
+||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''1''' ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop2/Slides/RecapStrM/Slides.pdf|Recap of Structural Modelling (MP)]] ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop2/Slides/kinetics.pdf|Theory of Kinetic Modelling (OE)]] ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop2/Slides/mca/Slides.pdf|Theory of Metabolic Control Analysis (OE)]] ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop2/Slides/Calvin/Slides.pdf|A Kinetic Model of the Calvin Cycle]](MP) ||||<style="font-size:10pt;text-align:center;">To be confirmed (A.N. Other) ||
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-||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''3''' ||<style="font-size:10pt;text-align:center;">Recap and update of the ScrumPy software ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Tue_3|Construction and Analysis of Kinetic Models With ScrumPy]] ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkShopTwo/AOB|Any Other Business]] ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''4''' ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Moin|Moin software for the Accliphot wiki]] ||<style="font-size:10pt;text-align:center;">[[Accliphot/WorkshopTwo//Practical_1|Kinetic Modelling Practical 1]] ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Practical_2|Kinetic Modelling Practical 2]]Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/GeneralDisc|Group Discussion]] ||
+||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''3''' ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop2/Slides/RecapScrumPy/Slides.pdf|Recap of Python and ScrumPy]] ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop2/Slides/ScrumPyKin/Slides.pdf|Construction and Analysis of Kinetic Models With ScrumPy]] ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Practical_3|Kinetic Modelling Practical 3 Modelling the Calvin Cycle]] ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/GeneralDisc|Group Discussion]] ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''4''' ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Moin|Moin software for the Accliphot wiki]] ||<style="font-size:10pt;text-align:center;">[[Accliphot/WorkshopTwo//Practical_1|Kinetic Modelling Practical 1]] ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Practical_2|Kinetic Modelling Practical 2]] Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkShopTwo/AOB|Any Other Business]] ||