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| Please follow [[http://mudshark.brookes.ac.uk/Meetings/Riga2013/Practicals/ScrumPyVM|these instructions]] to install [[http://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]] on your lap-top, before you arrive in Oxford. | Please revise the material from[[AccliPhot/WorkshopOne|workshop 1]] before arriving, and bring your laptop with ScrumPy installed. |
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| 1. Teaching materials linked in the time-table below are subject to change, however, the core content will stay the same. | 1. Material for the sessions will appear as links in the timetable, feel free to browse them as they become available, but be aware that some details may change. |
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| 1. There is a certain ammount of lee-way built into the timing of the practicals. Do not be alarmed if you do not complete a given practical by the end of the slot - simply pick up from where you left off in the next one. 1. Students should work independently as far as possible. Of course, discussion with your colleagues is expected and encouraged, but make sure ''you'' do the work on ''your'' computer. |
1. The workshop will run from 0900-1700, timings of individual sessions are likely to vary. |
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| ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''1''' ||<style="font-size:10pt;text-align:center;">Recap of Structural Modelling ||<style="font-size:10pt;text-align:center;">Theory of Kinetic Modelling ||<style="font-size:10pt;text-align:center;">Theory of Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">A Kinetic Model of the Calvin Cycle ||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkShopTwo/AOB|Any Other Business]] || ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''2''' ||<style="font-size:10pt;text-align:center;">Modelling Phaeodactylum ||<style="font-size:10pt;text-align:center;">Modelling Arabidopsis and Chlamydomonas ||<style="font-size:10pt;text-align:center;">Modelling the Light Reactions ||<style="font-size:10pt;text-align:center;">Modelling Bioreactors ||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/GeneralDisc|Group Discussion]] || |
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''1''' ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop2/Slides/RecapStrM/Slides.pdf|Recap of Structural Modelling (MP)]] ||<style="font-size:10pt;text-align:center;">Theory of Kinetic Modelling (OE) ||<style="font-size:10pt;text-align:center;">Theory of Metabolic Control Analysis (OE) ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop2/Slides/Calvin/Slides.pdf|A Kinetic Model of the Calvin Cycle]](MP) ||||<style="font-size:10pt;text-align:center;">To be confirmed (A.N. Other) || ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''2''' ||<style="font-size:10pt;text-align:center;">Modelling Phaeodactylum (Dipali) ||<style="font-size:10pt;text-align:center;">Modelling Arabidopsis and Chlamydomonas (Kailash) ||<style="font-size:10pt;text-align:center;">Modelling the Light Reactions (Anna) ||<style="font-size:10pt;text-align:center;">Modelling Bioreactors (Brieuc) ||||<style="font-size:10pt;text-align:center;">Modelling Chloroplast Signalling (Antonella) || |
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| ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''3''' ||<style="font-size:10pt;text-align:center;">Recap and update of the ScrumPy software ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 1 ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt;text-align:center;">Social Event || ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''4''' ||<style="font-size:10pt;text-align:center;">Moin software for the Accliphot wiki ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 1 ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt;text-align:center;">Social Event || |
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''3''' ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop2/Slides/RecapScrumPy/Slides.pdf|Recap of Python and ScrumPy]] ||<style="font-size:10pt;text-align:center;">[[http://mudsharkstatic.brookes.ac.uk/AccliPhot/Workshop2/Slides/ScrumPyKin/Slides.pdf|Construction and Analysis of Kinetic Models With ScrumPy]] ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Practical_3|Kinetic Modelling Practical 3 Modelling the Calvin Cycle]] ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/GeneralDisc|Group Discussion]] || ||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''4''' ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Moin|Moin software for the Accliphot wiki]] ||<style="font-size:10pt;text-align:center;">[[Accliphot/WorkshopTwo//Practical_1|Kinetic Modelling Practical 1]] ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Practical_2|Kinetic Modelling Practical 2]] Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkShopTwo/AOB|Any Other Business]] || |
Notes
Please revise the material fromworkshop 1 before arriving, and bring your laptop with ScrumPy installed.
- Material for the sessions will appear as links in the timetable, feel free to browse them as they become available, but be aware that some details may change.
- The workshop will run from 0900-1700, timings of individual sessions are likely to vary.
Session |
Mon |
Tue |
Wed |
Thur |
Fri |
||
1 |
Theory of Kinetic Modelling (OE) |
Theory of Metabolic Control Analysis (OE) |
To be confirmed (A.N. Other) |
||||
2 |
Modelling Phaeodactylum (Dipali) |
Modelling Arabidopsis and Chlamydomonas (Kailash) |
Modelling the Light Reactions (Anna) |
Modelling Bioreactors (Brieuc) |
Modelling Chloroplast Signalling (Antonella) |
||
Lunch |
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3 |
Kinetic Modelling Practical 2 Metabolic Control Analysis |
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4 |
Kinetic Modelling Practical 2 Metabolic Control Analysis |
Kinetic Modelling Practical 3 Modelling the Calvin Cycle |
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