Diff for "AccliPhot/WorkshopTwo" - Cell Systems Modelling Group

Differences between revisions 3 and 4

Notes

Please revise the material fromworkshop 1 before arriving, and bring your laptop with ScrumPy installed.
The timetable is currently a draft and subject to change, although the topics will stay substantially the same.
Material for the sessions will appear as links in the timetable, feel free to browse them as they become available, but be aware that some details may change.
The workshop will run from 0900-1700, timings of individual sessions are likely to vary.

Session	Mon	Tue	Wed	Thur	Fri
1	Recap of Structural Modelling	Theory of Kinetic Modelling	Theory of Metabolic Control Analysis	A Kinetic Model of the Calvin Cycle	To be confirmed
2	Modelling Phaeodactylum	Modelling Arabidopsis and Chlamydomonas	Modelling the Light Reactions	Modelling Bioreactors	To be confirmed
Lunch
3	Recap and update of the ScrumPy software	Kinetic Modelling Practical 1	Kinetic Modelling Practical 2 Metabolic Control Analysis	Kinetic Modelling Practical 3 Modelling the Calvin Cycle	Any Other Business
4	Moin software for the Accliphot wiki	Kinetic Modelling Practical 1	Kinetic Modelling Practical 2 Metabolic Control Analysis	Kinetic Modelling Practical 3 Modelling the Calvin Cycle	Group Discussion

-  ⇤ ← Revision 3 as of 2014-07-23 11:46:10 → 
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+   ← Revision 4 as of 2014-07-23 13:22:25 → ⇥
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- Please follow [[http://mudshark.brookes.ac.uk/Meetings/Riga2013/Practicals/ScrumPyVM|these instructions]] to install [[http://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]] on your lap-top, before you arrive in Oxford.
+ Please revise the material from[[../WorkshopOne|workshop 1]] before arriving, and bring your laptop with ScrumPy installed.
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-. Teaching materials linked in the time-table below are subject to change, however, the core content will stay the same.
+. The timetable is currently a draft and subject to change, although the topics will stay substantially the same.
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-. There  is a certain ammount of lee-way built into the timing of the  practicals. Do not be alarmed if you do not complete a given practical  by the end of the slot - simply pick up from where you left off in the  next one.
+. Material for the sessions will appear as links in the timetable, feel free to browse them as they become available, but be aware that some details may change.
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-.
 Students  should work independently as far as possible. Of course, discussion  with your colleagues is expected and encouraged, but make sure ''you'' do the work on ''your'' computer.
+.         The workshop will run from 0900-1700, timings of individual sessions are likely to vary.
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-||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''1''' ||<style="font-size:10pt;text-align:center;">Recap of Structural Modelling ||<style="font-size:10pt;text-align:center;">Theory of Kinetic Modelling ||<style="font-size:10pt;text-align:center;">Theory of Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">A Kinetic Model of the Calvin Cycle ||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkShopTwo/AOB|Any Other Business]] ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''2''' ||<style="font-size:10pt;text-align:center;">Modelling Phaeodactylum ||<style="font-size:10pt;text-align:center;">Modelling Arabidopsis and Chlamydomonas ||<style="font-size:10pt;text-align:center;">Modelling the Light Reactions ||<style="font-size:10pt;text-align:center;">Modelling Bioreactors ||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/GeneralDisc|Group Discussion]] ||
+||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''1''' ||<style="font-size:10pt;text-align:center;">Recap of Structural Modelling ||<style="font-size:10pt;text-align:center;">Theory of Kinetic Modelling ||<style="font-size:10pt;text-align:center;">Theory of Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">A Kinetic Model of the Calvin Cycle ||||<style="font-size:10pt;text-align:center;">To be confirmed ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''2''' ||<style="font-size:10pt;text-align:center;">Modelling Phaeodactylum ||<style="font-size:10pt;text-align:center;">Modelling Arabidopsis and Chlamydomonas ||<style="font-size:10pt;text-align:center;">Modelling the Light Reactions ||<style="font-size:10pt;text-align:center;">Modelling Bioreactors ||||<style="font-size:10pt;text-align:center;">To be confirmed ||
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-||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''3''' ||<style="font-size:10pt;text-align:center;">Recap and update of the ScrumPy software ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 1 ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt;text-align:center;">Social Event ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''4''' ||<style="font-size:10pt;text-align:center;">[[../WorkshopTwo/Moin|Moin software for the Accliphot wiki]] ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 1 ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt;text-align:center;">Social Event ||
+||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''3''' ||<style="font-size:10pt;text-align:center;">Recap and update of the ScrumPy software ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 1 ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkShopTwo/AOB|Any Other Business]] ||
||<style="font-size:10pt;text-align:center;vertical-align:bottom;">'''4''' ||<style="font-size:10pt;text-align:center;">[[AccliPhot/WorkshopTwo/Moin|Moin software for the Accliphot wiki]] ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 1 ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 2 Metabolic Control Analysis ||<style="font-size:10pt;text-align:center;">Kinetic Modelling Practical 3 Modelling the Calvin Cycle ||||||<style="font-size:10pt;text-align:center;">                        [[AccliPhot/WorkshopTwo/GeneralDisc|Group Discussion]]||