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+[[http://web.expasy.org/protparam/ | ProtParam]]: protein physical and chemical parameters, incl. pI, hydrophobicity, mol wt.

[[http://web.expasy.org/protscale/ | ProtScale ]]: protein profile computation and representation incl Kyte & Doolittle. 

[[http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_sopma.html | SOPMA]]: secondary structure predictor.

[[http://web.expasy.org/translate/ | ExPASy - Translate tool]]

[[http://prosite.expasy.org/scanprosite/ |ScanProsite ]]: Protein against PROSITE to find domains (Use left search box)

= EMBL-EBI =

[[http://www.ebi.ac.uk/ | European Bioinformatics Institute (EBI) Home Page]] 

[[http://www.ebi.ac.uk/Tools/sss/wublast/ | BLASTp Search form]] 

[[http://www.ebi.ac.uk/pdbe-srv/view/ | PDBe protein structure viewer]]

= NCBI =

[[http://www.ncbi.nlm.nih.gov/ | The National Center for Biotechnology Information]]

[[http://blast.ncbi.nlm.nih.gov/Blast.cgi | Basic Local Alignment Search Tool (BLASTn and BLASTp)]]

= Others =

[[http://www.pdb.org/pdb/home/home.do | RSCB Protein data bank viewer]]

[[http://www.ch.embnet.org/software/TMPRED_form.html| TMpred Server]] (Transmembrane prediction - not necessary for your proteins)

[[http://prodom.prabi.fr/prodom/current/html/home.php | The ProDom protein domain database]]

[[http://www.cbs.dtu.dk/services/SignalP/ | SignalP server]] (Predict signal peptide cleavage sites.)

[[http://biocyc.org/ | BioCyc]] Metabolic database