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Familiarise yourself with the following Familiarise yourself with the following [[attachment:paper]].

Exercises - ScrumPy and Elementary Modes analysis

Basic ScrumPy

Copy and load the toy model described previously.

1. Using built-in Python methods find out the number of reactions and metabolites in the network.

2. Write a function that given a model, returns a list of reactions that are in singleton subsets.

Hint: What is special about the names of subsets of size > 1.

Elementary Modes analysis

Copy and load the Calvin model.

Familiarise yourself with the following paper.

None: Meetings/Delhi2012/Practicals/Practical_2/ExSPyEM (last edited 2012-10-17 10:44:47 by mark)