Exercises - ScrumPy and Elementary Modes analysis

Basic ScrumPy

Copy and load the toy model described previously.

1. Using built-in Python methods find out the number of reactions and metabolites in the network.

2. Write a function that given a model, returns a list of reactions that are in singleton subsets.

Hint: What is special about the names of subsets of size > 1.

Copy and load the Calvin model.

Familiarise yourself with the following Pool_03.pdf.