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= Delhi Workshop on Metabolic Modelling 2012 = == Important note to students == Not all details here are yet finalised, so do check back regularly. == Timetable == ||'''Time''' ||'''Activity''' ||'''Who''' || ||Mon 15th, AM ||[[Meetings/Delhi2012/Lectures/Session1 | Session 1]]: Introduction to metabolic modelling. Mathematical representation of metabolic networks. Null space and it's significance. ||David Fell; Mark Poolman || ||Mon 15th, PM ||[[Meetings/Delhi2012/Practicals/Practical_1|Practical 1]]: Familiarisation with pathway and enzyme databases. ||Hassan Hartman || ||Tue 16th, AM ||[[Meetings/Delhi2012/Lectures/Session2 | Session 2]]: Null spce and elementary modes. Applications of elementary modes to real systems. ||David Fell; Mark Poolman; Sudip Kundu || ||Tue 16th, PM ||[[Meetings/Delhi2012/Practicals/Practical_2|Practical 2]]: Brief Python introduction; Elementary modes analysis ||Hassan Hartman; Sudip Kundu || ||Wed 17th, AM ||[[Meetings/Delhi2012/Lectures/Session3 | Session 3]]: Linear Programming and Flux Balance Analysis. Building genome-scale metabolic models: data sources and issues. ||Mark Poolman; Oliver Ebenhoeh || ||Wed 17th, PM ||[[Meetings/Delhi2012/Practicals/Practical_3|Practical 3]]: Intro to FBA with {{{ScrumPy}}} ||Hassan Hartman; Sudip Kundu || ||Thu 18th, AM ||[[Meetings/Delhi2012/Lectures/Session4 | Session 4]]: Applications of genome-scale modelling and/or metabolic scope ||Mark Poolman; Oliver Ebenhoeh; Sudip Kundu || ||Thu 18th, PM ||[[Meetings/Delhi2012/Practicals/Practical_4|Practical 4]]: FBA continued and/or metabolic scope ||Hassan Hartman; Sudip Kundu || ||Fri 19th, AM ||[[Meetings/Delhi2012/Lectures/Session5 | Session 5]]: 1. Metabolic scope (if not in session 4). 2. Review and Conclusions ||Oliver Ebenhoeh; All || ||Fri 19th, AM ||[[Meetings/Delhi2012/Practicals/Practical_5|Practical 5]]: Metabolic scope ||Oliver Ebenhoeh || |
Delhi Workshop on Metabolic Modelling 2012
Important note to students
Not all details here are yet finalised, so do check back regularly.
Timetable
Time |
Activity |
Who |
Mon 15th, AM |
Session 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. Null space and it's significance. |
David Fell; Mark Poolman |
Mon 15th, PM |
Practical 1: Familiarisation with pathway and enzyme databases. |
Hassan Hartman |
Tue 16th, AM |
Session 2: Null spce and elementary modes. Applications of elementary modes to real systems. |
David Fell; Mark Poolman; Sudip Kundu |
Tue 16th, PM |
Practical 2: Brief Python introduction; Elementary modes analysis |
Hassan Hartman; Sudip Kundu |
Wed 17th, AM |
Session 3: Linear Programming and Flux Balance Analysis. Building genome-scale metabolic models: data sources and issues. |
Mark Poolman; Oliver Ebenhoeh |
Wed 17th, PM |
Practical 3: Intro to FBA with ScrumPy |
Hassan Hartman; Sudip Kundu |
Thu 18th, AM |
Session 4: Applications of genome-scale modelling and/or metabolic scope |
Mark Poolman; Oliver Ebenhoeh; Sudip Kundu |
Thu 18th, PM |
Practical 4: FBA continued and/or metabolic scope |
Hassan Hartman; Sudip Kundu |
Fri 19th, AM |
Session 5: 1. Metabolic scope (if not in session 4). 2. Review and Conclusions |
Oliver Ebenhoeh; All |
Fri 19th, AM |
Practical 5: Metabolic scope |
Oliver Ebenhoeh |
Practical 2
Introduction to Python
Introduction to ScrumPy
Elementary modes analysis
Practical 3
Introduction to Flux Balance Analysis in ScrumPy
Practical 3