|
Size: 3221
Comment:
|
Size: 3252
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 31: | Line 31: |
| || ||14:30 ||Guest lecture || ||SK || | || ||14:30 ||Constraint-based modelling of C3, C4 and CAM || ||SK || |
Metabolic Modelling: Tools, Techniques, and Applications in Research
India 2024
Tutors
- Dr Mark Poolman (MP: Oxford Brookes University)
- Dr Anu Raghunathan (AR: NCL, Pune)
- Dr Dipali Singh (DS: Quadram Institute, Norwich)
- Pareena Verma (PV: Oxford Brookes University)
- Dr Trunil Desai (TD: Oxford Brookes University)
Guest Speaker
- Prof. Sundip Kundu (SK: University of Calcutta)
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Tutor |
Day 1 - Tues(17/09) |
|
|
|
|
PM |
12:00 |
Arrival, Admin & Registration etc |
|
|
|
12:30 |
Lunch |
|
|
|
14:30 |
Welcome and introduction to the course - why do modelling? |
|
MP/ AR |
|
14:30 |
Lecture 1: Introduction to metabolic modelling. |
PV/TD |
|
|
15:00 |
Lecture 2: Python and computational representation of metabolic networks. |
TD |
|
|
15:30 |
Tea/Coffee Break |
|
|
|
15:45 |
P1. Computers: checking internet connectivity, software installation. |
All |
|
|
|
P2. Python and ScrumPy |
All |
|
|
|
Close |
|
|
|
|
|
|
|
Day 2 - Wed (18/09) |
|
|
|
|
AM |
09:00 |
Lecture 3: Null space, elementary modes and conserved cycles |
TD |
|
|
10:00 |
Lecture 4. Linear programming, Flux Balance Analysis and Applications |
AR |
|
|
11:00 |
P3. Null space, subsets and elementary modes |
All |
|
PM |
12:30 |
Lunch |
|
|
|
14:30 |
Constraint-based modelling of C3, C4 and CAM |
|
SK |
|
15:30 |
Tea/Coffee Break |
|
|
|
15:45 |
P4: Linear programming and Flux Balance Analysis |
|
|
|
|
|
|
|
Day 3 Thurs (19/09) |
|
|
|
|
AM |
9:00 |
P4: Continued |
|
|
|
10:00 |
Lecture 5: Determination of minimal media requirements for Campylobacter jejuni |
DS |
|
|
11:00 |
P5: Determination of minimal media requirements for Campylobacter jejuni |
All |
|
PM |
12:30 |
Lunch |
|
|
|
14:30 |
Lecture 6: Antimicrobial target identification by GSMM - INNOTARGETS |
PV/MP |
|
|
15:30 |
Tea/Coffee Break |
|
|
|
15:45 |
P6: Antimicrobial target identification by GSMM - INNOTARGETS |
All |
|
Day 4 - Fri (20/09) |
|
|
|
|
AM |
09:00 |
Finish Practicals/General Discussion |
|
All |
|
|
Go Home! |
|
|