Metabolic Modelling: Tools, Techniques, and Applications in Research
India 2024
Tutors
- Dr Mark Poolman (MP: Oxford Brookes University)
- Dr Anu Raghunathan (AR: NCL, Pune)
- Dr Dipali Singh (DS: Quadram Institute, Norwich)
- Pareena Verma (PV: Oxford Brookes University)
- Dr Trunil Desai (TD: Oxford Brookes University)
Guest Speaker
- Prof. Sundip Kundu (SK: University of Calcutta)
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Tutor |
Day 1 - Tues(17/09) |
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PM |
12:00 |
Arrival, Admin & Registration etc |
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12:30 |
Lunch |
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14:30 |
Welcome and introduction to the course - why do modelling? |
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MP/ AR |
|
14:30 |
Lecture 1: Introduction to metabolic modelling. |
PV/TD |
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15:00 |
Lecture 2: Python and computational representation of metabolic networks. |
TD |
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|
15:30 |
Tea/Coffee Break |
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15:45 |
P1. Computers: checking internet connectivity, software installation. |
All |
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P2. Python and ScrumPy |
All |
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Close |
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Day 2 - Wed (18/09) |
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AM |
09:00 |
Lecture 3: Null space, elementary modes and conserved cycles |
TD |
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10:00 |
Lecture 4. Linear programming, Flux Balance Analysis and Applications |
AR |
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11:00 |
P3. Null space, subsets and elementary modes |
All |
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PM |
12:30 |
Lunch |
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14:30 |
Constraint-based modelling of C3, C4 and CAM |
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SK |
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15:30 |
Tea/Coffee Break |
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15:45 |
P4: Linear programming and Flux Balance Analysis |
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Day 3 Thurs (19/09) |
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AM |
9:00 |
P4: Continued |
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10:00 |
Lecture 5: Determination of minimal media requirements for Campylobacter jejuni |
DS |
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11:00 |
P5: Determination of minimal media requirements for Campylobacter jejuni |
All |
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PM |
12:30 |
Lunch |
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14:30 |
Lecture 6: Antimicrobial target identification by GSMM - INNOTARGETS |
PV/MP |
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15:30 |
Tea/Coffee Break |
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15:45 |
P6: Antimicrobial target identification by GSMM - INNOTARGETS |
All |
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Day 4 - Fri (20/09) |
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AM |
09:00 |
Finish Practicals/General Discussion |
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All |
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Go Home! |
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