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Metabolic Modelling: Tools, Techniques, and Applications in Research
India 2024
Tutors
- Dr Mark Poolman (MP: Oxford Brookes University)
- Dr Anu Raghunathan (AR: NCL, Pune)
- Dr Dipali Singh (DS: Quadram Institute, Norwich)
- Pareena Verma (PV: Oxford Brookes University)
- Dr Trunil Desai (TD: Oxford Brookes University)
Guest Speaker
- TBD
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Tutor |
Day 1 - Tues(17/09) |
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AM |
09:00 |
Arrival, Admin & Registration etc |
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12:00 |
Lunch |
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PM |
13:00 |
Welcome and introduction to the course - why do modelling? |
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MP, AR |
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13:30 |
Lecture 1: Introduction to metabolic modelling. |
PV/TD |
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15:00 |
Tea/coffee |
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15:30 |
Lecture 2: Python and computational representation of metabolic networks. |
TD |
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16:30 |
P1. Computers: checking internet connectivity, software installation. |
All |
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P2. Python and ScrumPy |
All |
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Close |
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Day 2 - Wed (18/09) |
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AM |
09:00 |
Lecture 3: Null space, elementary modes and conserved cycles |
MP |
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10:00 |
P3. Null space, subsets and elementary modes |
All |
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11:00 |
tea/coffee |
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11:30 |
P3 continues |
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All |
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Lunch |
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PM |
13:00 |
Guest lecture |
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Sudip |
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14:00 |
Lecture 4. Linear programming and Flux Balance Analysis |
MP |
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15:00 |
tea/coffe |
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15:30 |
P4: LP - maybe? |
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16:00 |
FBA - Title to be added by Anu |
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AR |
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Day 3 Thurs (19/09) |
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AM |
09:00 |
Lecture 5: Construction and Validation of GSMs |
DS |
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10:00 |
Lecture 6: Application of GSMM in cancer biology/CoVID model? |
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AR |
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11:00 |
Lecture 7: Antimicrobial target identification by GSMM - INNOTARGETS |
MP/PV |
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12:00 |
P5: Antimicrobial target identification by GSMM - INNOTARGETS |
All |
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Lunch |
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14:00 |
Lecture 8: Determination of minimal media requirements for Campylobacter jejuni |
DS |
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15:00 |
P6: Determination of minimal media requirements for Campylobacter jejuni |
All |
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Day 4 - Fri (20/09) |
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AM |
09:00 |
Finish Practicals/General Discussion |
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All |
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Go Home! |
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