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Workshop on Metabolic Modelling - Provisional Timetable
This timetable is not yet finalised. Both timings and content are liable to change, but the material here represents what will be covered in the talk.
Tutors
- David Fell (DF: Oxford Brookes University)
- Mark Poolman (MP: Oxford Brookes University)
- Noah Mesfin (NM: Oxford Brookes University)
- Ela Al-Saidi (ES: Oxford Brookes University)
- Kailash Adhikari (KA)
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Thursday |
AM |
Admin & Registration |
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28/06/18 |
|
Opening Ceremony |
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Welcome and introduction to the course |
|
DF |
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Lunch |
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PM |
L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week |
DF |
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Tea/coffee |
|
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L2. Computational representation of metabolic networks |
MP |
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P1. Computers: checking internet connectivity, software installation. |
Installation of ScrumPy. |
DF, MP, TDC,NM |
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Friday |
AM |
L3. Null space and elementary modes |
NM |
|
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P2. Python and ScrumPy |
Prac2 instructions |
DF, MP, TDC,NM |
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Break |
|
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P2. Python and ScrumPy (continued) |
Prac2 instructions |
DF, MP, TDC,NM |
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Lunch |
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PM |
L4. Biotechnological applications of metabolic network analysis |
DF |
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P3. Models, kernels, subsets and elementary modes |
All |
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Break |
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P3. Models, kernels, subsets and elementary modes (continued) |
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All |
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Monday |
AM |
L5. Linear Programming and Flux Balance Analysis |
NM |
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L6. Sources of data for metabolic models |
DF |
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Break |
|
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P4. Structural analysis of the Calvin Cycle. |
ALL |
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Lunch |
|
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|
PM |
L7. Building genome-scale metabolic networks |
MP |
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P5. Building a ScrumPy model from databases |
All |
|
******* |
****** |
I think we should scrap P5 - we don't do any LP/FBA practicals until the last day |
****** |
******* |
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Tuesday |
|
L8. a, Acetobacterium woodii. b.** Need soething else ?? Mark or Ela ?? (was Nicole) ** |
NM, **??** |
|
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P6. Flux Balance Analysis of fatty acid biosynthesis in E coli. |
All |
|
|
|
L8 Modelling photosynthesis in eukaryotes (title TBC) |
**Need link to slides** |
KA |
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P6 continued |
|
All |
|
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Tea/Coffee |
|
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P7. Analysing a genome scale model |
All |
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Close |
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Dinner |
|
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