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| || || || || || || ||'''Monday''' ||'''AM''' ||L5. Linear Programming and Flux Balance Analysis ||[[http://mudsharkstatic.brookes.ac.uk/Nepal2018/L5.pdf|Slides]] ||NM || || || ||L6. Sources of data for metabolic models ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L6.pdf|Slides]] ||DF || || || ||Break || || || || || ||P4. Structural analysis of the Calvin Cycle. ||[[Meetings/C1netWork4/Prac4|Prac 4 instructions]] ||ALL || |
|| || ||<<BR>>||<<BR>>|| || ||'''Monday''' ||'''AM''' ||P4. Structural analysis of the Calvin Cycle. ||[[Meetings/C1netWork4/Prac4|Prac 4 instructions]] ||ALL || || || ||Break|| || || || || ||L5. Linear Programming and Flux Balance Analysis ||[[http://mudsharkstatic.brookes.ac.uk/Nepal2018/L5.pdf|Slides]] ||NM || || || ||L6. Sources of data for metabolic models ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L6.pdf|Slides]]||DF|| |
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| || || ||P5. Building a !ScrumPy model from databases ||[[http://mudshark.brookes.ac.uk/Meetings/C1netWork4/Prac5|Prac 5 instructions]] ||All || ||*******||******||I think we should scrap P5 - we don't do any LP/FBA practicals until the last day||******||*******|| |
|| || ||P5. Flux Balance Analysis of fatty acid biosynthesis in ''E coli''. ||[[Meetings/C1netWork4/Prac6|Prac 5 instructions]] ||All || |
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| ||'''Tuesday''' || ||L8. a, ''Acetobacterium woodii''. b.''** Need soething else ?? Mark or Ela ?? (was Nicole) **'' ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L8_NM.pdf|Noah's slides]]; ||NM, **??** || || || ||P6. Flux Balance Analysis of fatty acid biosynthesis in ''E coli''. ||[[Meetings/C1netWork4/Prac6|Prac 6 instructions]] ||All || |
||'''Tuesday''' || ||L8. '''a''': The unique metabolism of ''Acetobacterium woodii''. '''b''': Beyond Structural Modelling. ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L8_NM.pdf|Noah's slides]]; ||NM, EA || || || ||P6. Analysing a genome scale model ||[[Meetings/C1NetWork4/Prac7|Instructions]]||All || || || ||Break|| || || |
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| || || ||P6 continued || ||All || || || ||Tea/Coffee || || || || || ||P7. Analysing a genome scale model ||[[Meetings/C1NetWork4/Prac7|Instructions]] ||All || || || ||Close || || || || || ||Dinner || || || |
|| || ||Lunch || ||All || || || ||P6 ctd. || ||All || || || ||Closing remarks || || || || || ||Certificates || || || |
Workshop on Metabolic Modelling - Provisional Timetable
This timetable is not yet finalised. Both timings and content are liable to change, but the material here represents what will be covered in the talk.
Tutors
- David Fell (DF: Oxford Brookes University)
- Mark Poolman (MP: Oxford Brookes University)
- Noah Mesfin (NM: Oxford Brookes University)
- Ela Al-Saidi (ES: Oxford Brookes University)
- Kailash Adhikari (KA)
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Thursday |
AM |
Admin & Registration |
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28/06/18 |
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Opening Ceremony |
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Welcome and introduction to the course |
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DF |
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Lunch |
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PM |
L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week |
DF |
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Tea/coffee |
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L2. Computational representation of metabolic networks |
MP |
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P1. Computers: checking internet connectivity, software installation. |
Installation of ScrumPy. |
DF, MP, TDC,NM |
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Friday |
AM |
L3. Null space and elementary modes |
NM |
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P2. Python and ScrumPy |
Prac2 instructions |
DF, MP, TDC,NM |
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Break |
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P2. Python and ScrumPy (continued) |
Prac2 instructions |
DF, MP, TDC,NM |
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Lunch |
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PM |
L4. Biotechnological applications of metabolic network analysis |
DF |
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P3. Models, kernels, subsets and elementary modes |
All |
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Break |
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P3. Models, kernels, subsets and elementary modes (continued) |
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All |
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Monday |
AM |
P4. Structural analysis of the Calvin Cycle. |
ALL |
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Break |
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L5. Linear Programming and Flux Balance Analysis |
NM |
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L6. Sources of data for metabolic models |
DF |
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Lunch |
|
|
|
PM |
L7. Building genome-scale metabolic networks |
MP |
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P5. Flux Balance Analysis of fatty acid biosynthesis in E coli. |
All |
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Tuesday |
|
L8. a: The unique metabolism of Acetobacterium woodii. b: Beyond Structural Modelling. |
NM, EA |
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P6. Analysing a genome scale model |
All |
|
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Break |
|
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L8 Modelling photosynthesis in eukaryotes (title TBC) |
**Need link to slides** |
KA |
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Lunch |
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All |
|
|
P6 ctd. |
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All |
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Closing remarks |
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Certificates |
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