|
Size: 3543
Comment:
|
Size: 3633
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 20: | Line 20: |
| || || ||P1. Computers: checking internet connectivity, software installation. ||[[Meetings/C1netWork4/ScrumPyInstall|Installation]] of !ScrumPy. ||DF, MP, TDC,NM || | || || ||P1. Computers: checking internet connectivity, software installation. ||[[Meetings/Nepal2018/ScrumPyInstall|Installation]] of !ScrumPy. ||All || |
| Line 23: | Line 23: |
| || || ||P2. Python and !ScrumPy ||[[Meetings/C1netWork4/Prac2|Prac2]] instructions ||DF, MP, TDC,NM || | || || ||Demo for Prac 2.|| ||TBC|| || || ||P2. Python and !ScrumPy (Part 1) ||[[Meetings/Nepal2018/Prac2|Prac2]] ***instructions ||All || |
| Line 25: | Line 26: |
| || || ||P2. Python and !ScrumPy (continued) ||[[Meetings/C1netWork4/Prac2|Prac2]] instructions ||DF, MP, TDC,NM || | || || ||P2. Python and !ScrumPy (Part 2) ||[[Meetings/Nepal2018/Prac2|Prac2]] ***instructions ||All || |
| Line 28: | Line 29: |
| || || ||Demo for Prac 3|| ||TBC|| | |
| Line 31: | Line 33: |
| || || ||<<BR>>||<<BR>>|| || ||'''Monday''' ||'''AM''' ||P4. Structural analysis of the Calvin Cycle. ||[[Meetings/C1netWork4/Prac4|Prac 4 instructions]] ||ALL || || || ||Break|| || || |
|| || ||<<BR>> ||<<BR>> || || ||'''Monday'''||'''AM'''||Demo for Prac4 (??)|| || || || || ||P4. Structural analysis of the Calvin Cycle. ||[[Meetings/C1netWork4/Prac4|Prac 4 instructions]] ||ALL || || || ||Break || || || |
| Line 35: | Line 38: |
| || || ||L6. Sources of data for metabolic models ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L6.pdf|Slides]]||DF|| | || || ||L6. Sources of data for metabolic models ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L6.pdf|Slides]] ||DF || |
| Line 41: | Line 44: |
| || || ||P6. Analysing a genome scale model ||[[Meetings/C1NetWork4/Prac7|Instructions]]||All || || || ||Break|| || || |
|| || ||P6. Analysing a genome scale model ||[[Meetings/C1NetWork4/Prac7|Instructions]] ||All || || || ||Break || || || |
Workshop on Metabolic Modelling - Provisional Timetable
This timetable is not yet finalised. Both timings and content are liable to change, but the material here represents what will be covered in the talk.
Tutors
- David Fell (DF: Oxford Brookes University)
- Mark Poolman (MP: Oxford Brookes University)
- Noah Mesfin (NM: Oxford Brookes University)
- Ela Al-Saidi (ES: Oxford Brookes University)
- Kailash Adhikari (KA)
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Thursday |
AM |
Admin & Registration |
|
|
28/06/18 |
|
Opening Ceremony |
|
|
|
|
Welcome and introduction to the course |
|
DF |
|
|
Lunch |
|
|
|
PM |
L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week |
DF |
|
|
|
Tea/coffee |
|
|
|
|
L2. Computational representation of metabolic networks |
MP |
|
|
|
P1. Computers: checking internet connectivity, software installation. |
Installation of ScrumPy. |
All |
|
|
|
|
|
Friday |
AM |
L3. Null space and elementary modes |
NM |
|
|
|
Demo for Prac 2. |
|
TBC |
|
|
P2. Python and ScrumPy (Part 1) |
Prac2 ***instructions |
All |
|
|
Break |
|
|
|
|
P2. Python and ScrumPy (Part 2) |
Prac2 ***instructions |
All |
|
|
Lunch |
|
|
|
PM |
L4. Biotechnological applications of metabolic network analysis |
DF |
|
|
|
Demo for Prac 3 |
|
TBC |
|
|
P3. Models, kernels, subsets and elementary modes |
All |
|
|
|
Break |
|
|
|
|
P3. Models, kernels, subsets and elementary modes (continued) |
|
All |
|
|
|
|
|
Monday |
AM |
Demo for Prac4 (??) |
|
|
|
|
P4. Structural analysis of the Calvin Cycle. |
ALL |
|
|
|
Break |
|
|
|
|
L5. Linear Programming and Flux Balance Analysis |
NM |
|
|
|
L6. Sources of data for metabolic models |
DF |
|
|
|
Lunch |
|
|
|
PM |
L7. Building genome-scale metabolic networks |
MP |
|
|
|
P5. Flux Balance Analysis of fatty acid biosynthesis in E coli. |
All |
|
|
|
|
|
|
Tuesday |
|
L8. a: The unique metabolism of Acetobacterium woodii. b: Beyond Structural Modelling. |
NM, EA |
|
|
|
P6. Analysing a genome scale model |
All |
|
|
|
Break |
|
|
|
|
L8 Modelling photosynthesis in eukaryotes (title TBC) |
**Need link to slides** |
KA |
|
|
Lunch |
|
All |
|
|
P6 ctd. |
|
All |
|
|
Closing remarks |
|
|
|
|
Certificates |
|
|
|
|
|
|
|