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| __'''Note: **Items** in the timetable in represent new material.'''__ |
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| ||'''Thursdaay''' || ||Admin & Registration || || || | ||'''Thursday''' || ||Admin & Registration || || || |
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| ||29/06/18 || ||L3. Null space and elementary modes ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L3.pdf|Slides]] ||MP || | ||29/06/18 || ||L3. Null space and elementary modes ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L3.pdf|Slides]] ||NM || |
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| || || ||Coffee/Tea || || || | || || || || || || |
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| || || ||L4. Biotechnological applications of metabolic network analysis L4a. Elementary modes analysis of novel product synthesis. ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L4.pdf|Slides]] [[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L4_NP_EMA.pdf|Slides]] ||DF, NP || | || || ||L4. Biotechnological applications of metabolic network analysis L4a.**L4 B need something else (was Nicole)** ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L4.pdf|Slides]] ||DF, ** ?? ** || |
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| ||30/06/18 || ||L5. Linear Programming and Flux Balance Analysis ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L5.pdf|Slides]] ||MP || | ||30/06/18 || ||L5. Linear Programming and Flux Balance Analysis ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L5.pdf|Slides]] ||NM || |
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| ||01/07/18 ||09:00 ||L8. a, ''Acetobacterium woodii''. b. ''Cupriavidus necator'' ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L8_NM.pdf|Noah's slides]]; [[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L8_NP_GS.pdf|Nicole's slides]] ||NM, NP || | ||01/07/18 ||09:00 ||L8. a, ''Acetobacterium woodii''. b.''** Need soething else (was Nicole) **'' ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L8_NM.pdf|Noah's slides]]; ||NM, **??** || |
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| || || ||L8 c. ''Clostridium autoethanogenum''. L9. Modelling metabolism of Non-Aureus Staphylococci ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L8_RN.pdf|Rupert's slides]]; [[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L9_Maite.pdf|Maite's slides]] ||RN, TDC || | || || ||L8 ** what to do here? Was Rupert and Maite's talks (Ask Kailash)** || ||**?KA?** || |
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| ||'''Tuesday'''|| || || || || | ||'''Tuesday''' || || || || || |
!!! Page under construction - Ignore it!!!
Workshop on Metabolic Modelling
Introduction to Structural Modelling
Note: **Items** in the timetable in represent new material.
Tutors
- David Fell (DF: Oxford Brookes University)
- Mark Poolman (MP: Oxford Brookes University)
- Noah Mesfin (NM: Oxford Brookes University)
- Ela Al-Saidi (ES: Oxford Brookes University)
- Kailash Adhikari (KA)
Course Timetable and Resources Index
Contents below are subject to modification, especially the links.
Day |
Time |
Activity |
Links |
Lecturer |
Thursday |
|
Admin & Registration |
|
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28/06/18 |
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Lunch |
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Opening and introductions |
|
DF |
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L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week |
DF |
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Tea/coffee |
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L2. Computational representation of metabolic networks |
MP |
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|
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P1. Computers: checking internet connectivity, software installation. |
Installation of ScrumPy. |
DF, MP, TDC,NM |
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Friday |
|
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29/06/18 |
|
L3. Null space and elementary modes |
NM |
|
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P2. Python and ScrumPy |
Prac2 instructions |
DF, MP, TDC,NM |
|
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P2. Python and ScrumPy (continued) |
Prac2 instructions |
DF, MP, TDC,NM |
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L4. Biotechnological applications of metabolic network analysis L4a.**L4 B need something else (was Nicole)** |
DF, ** ?? ** |
|
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P3. Models, kernels, subsets and elementary modes |
All |
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15:45 |
P3. Models, kernels, subsets and elementary modes (continued) |
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All |
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Close |
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Saturday |
|
|
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30/06/18 |
|
L5. Linear Programming and Flux Balance Analysis |
NM |
|
|
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L6. Sources of data for metabolic models |
DF |
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Coffee/Tea |
|
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P4. Structural analysis of the Calvin Cycle. |
DF, MP, TDC,NM |
|
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L7. Building genome-scale metabolic networks |
MP |
|
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P5. Building a ScrumPy model from databases |
All |
|
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|
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Sunday |
|
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01/07/18 |
09:00 |
L8. a, Acetobacterium woodii. b.** Need soething else (was Nicole) ** |
NM, **??** |
|
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|
11:00 |
P6. Flux Balance Analysis of fatty acid biosynthesis in E coli. |
All |
|
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L8 ** what to do here? Was Rupert and Maite's talks (Ask Kailash)** |
|
**?KA?** |
|
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P6 continued |
|
All |
|
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Tea/Coffee |
|
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P7. Analysing a genome scale model |
All |
|
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Close |
|
|
|
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Dinner |
|
|
|
|
|
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|
Monday |
|
Breakfast |
|
|
02/07/18 |
|
P7 continued |
|
All |
|
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All |
|
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DF& MP |
Tuesday |
|
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03/07/18 |
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