|
Size: 3602
Comment:
|
Size: 3768
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 21: | Line 21: |
| || || || || || || | |
| Line 30: | Line 31: |
| || || || || || || | |
| Line 33: | Line 35: |
| || || ||P4. Structural analysis of the Calvin Cycle. ||[[Meetings/C1netWork4/Prac4|Prac 4 instructions]] ||DF, MP, TDC,NM || | || || ||P4. Structural analysis of the Calvin Cycle. ||[[Meetings/C1netWork4/Prac4|Prac 4 instructions]] ||ALL || |
| Line 37: | Line 39: |
| ||'''Tuesday''' || ||L8. a, ''Acetobacterium woodii''. b.''** Need soething else (was Nicole) **'' ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L8_NM.pdf|Noah's slides]]; ||NM, **??** || | ||*******||******||I think we should scrap P5 - we don't do any LP/FBA practicals until the last day||******||*******|| || || || || || || ||'''Tuesday''' || ||L8. a, ''Acetobacterium woodii''. b.''** Need soething else ?? Mark or Ela ?? (was Nicole) **'' ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L8_NM.pdf|Noah's slides]]; ||NM, **??** || |
| Line 39: | Line 43: |
| || || || || || || |
Workshop on Metabolic Modelling - Provisional Timetable
This timetable is not yet finalised. Both timings and content are liable to change, but the material here represents what will be covered in the talk.
Tutors
- David Fell (DF: Oxford Brookes University)
- Mark Poolman (MP: Oxford Brookes University)
- Noah Mesfin (NM: Oxford Brookes University)
- Ela Al-Saidi (ES: Oxford Brookes University)
- Kailash Adhikari (KA)
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Thursday |
AM |
Admin & Registration |
|
|
28/06/18 |
|
Opening Ceremony |
|
|
|
|
Welcome and introduction to the course |
|
DF |
|
|
Lunch |
|
|
|
PM |
L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week |
DF |
|
|
|
Tea/coffee |
|
|
|
|
L2. Computational representation of metabolic networks |
MP |
|
|
|
P1. Computers: checking internet connectivity, software installation. |
Installation of ScrumPy. |
DF, MP, TDC,NM |
|
|
|
|
|
Friday |
AM |
L3. Null space and elementary modes |
NM |
|
|
|
P2. Python and ScrumPy |
Prac2 instructions |
DF, MP, TDC,NM |
|
|
Break |
|
|
|
|
P2. Python and ScrumPy (continued) |
Prac2 instructions |
DF, MP, TDC,NM |
|
|
Lunch |
|
|
|
PM |
L4. Biotechnological applications of metabolic network analysis |
DF |
|
|
|
P3. Models, kernels, subsets and elementary modes |
All |
|
|
|
Break |
|
|
|
|
P3. Models, kernels, subsets and elementary modes (continued) |
|
All |
|
|
|
|
|
Monday |
AM |
L5. Linear Programming and Flux Balance Analysis |
NM |
|
|
|
L6. Sources of data for metabolic models |
DF |
|
|
|
Break |
|
|
|
|
P4. Structural analysis of the Calvin Cycle. |
ALL |
|
|
|
Lunch |
|
|
|
PM |
L7. Building genome-scale metabolic networks |
MP |
|
|
|
P5. Building a ScrumPy model from databases |
All |
|
******* |
****** |
I think we should scrap P5 - we don't do any LP/FBA practicals until the last day |
****** |
******* |
|
|
|
|
|
Tuesday |
|
L8. a, Acetobacterium woodii. b.** Need soething else ?? Mark or Ela ?? (was Nicole) ** |
NM, **??** |
|
|
|
P6. Flux Balance Analysis of fatty acid biosynthesis in E coli. |
All |
|
|
|
L8 Modelling photosynthesis in eukaryotes (title TBC) |
**Need link to slides** |
KA |
|
|
P6 continued |
|
All |
|
|
Tea/Coffee |
|
|
|
|
P7. Analysing a genome scale model |
All |
|
|
|
Close |
|
|
|
|
Dinner |
|
|
|
|
|
|
|