|
Size: 4194
Comment:
|
Size: 4303
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 2: | Line 2: |
| Line 56: | Line 55: |
| || || ||P6. Identifying pathways for TAG synthesis in ''P. tricornutm'' ||[[Meetings/Nepal2018/Prac5|Prac 6]] ||All || | || || ||P6. Identifying pathways for TAG synthesis in ''P. tricornutm'' ||[[Meetings/Nepal2018/Prac5|EColiNepal]] [[https://mudshark.brookes.ac.uk/Meetings/Nottingham2022/Prac5|Prac5]] ||All || |
| Line 60: | Line 59: |
| || || ||P6 (ctd) P7: KOs for ethelene production in ''C. necator'' ||[[Meetings/Nepal2018/Prac5|Prac 5]] || || | || || ||P6 (ctd) P7: KOs for ethelene production in ''C. necator'' ||[[https://mudshark.brookes.ac.uk/Meetings/Nottingham2022/Prac6|Prac 6]] || || |
Contents subject to change - especially linked material.
Overview
Timetable overview (Subject to change)
Workshop on Metabolic Modelling
Nottingham 2022
Tutors
- Mark Poolman (MP: Oxford Brookes University)
- David Fell (DF: Oxford Brookes University)
- Yanica Said (YS: Oxford Brookes University)
- Dipali Singh (DS: Quadram Institute, Norwich)
- Nicole Pearcy (NP: University of Nottingham)
Guest Speaker
- Prof. John Wain (JW: Quadram Institute, Norwich)
Reading List
A reading list for topics covered in the course is provided here.
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Tuesday |
AM |
|
|
|
03/04/22 |
09:00 |
Arrival, Admin & Registration |
|
|
|
PM |
|
|
|
|
12:00 |
Lunch |
|
|
|
13:00 |
Welcome and introduction to the course. Outline of the week. |
|
MP et al |
|
|
Lecture 1: Title TBC |
JW |
|
|
|
Lecture 2: Introduction to metabolic modelling. Mathematical representation of metabolic networks. |
DF |
|
|
|
Tea/coffee |
|
|
|
|
Lecture 3: Python and computational representation of metabolic networks. |
MP |
|
|
|
P1. Computers: checking internet connectivity, software installation. |
Installation of ScrumPy. |
All |
|
|
Close |
|
|
Wednesday |
AM |
|
|
|
|
09:00 |
P2. Python and ScrumPy |
All |
|
|
|
Lecture 4: Null space, subsets and elementary modes |
MP |
|
|
11:00 |
Break |
|
|
|
|
P3. Null space, subsets and elementary modes |
All |
|
|
13:00 |
Lunch |
|
|
|
PM |
Lecture 5. A. woodii and the elementary modes of the Woods-Ljungdahl Pathway |
DF |
|
|
|
P4. Elementary Modes of the Woods-Ljungdahl Pathway |
All |
|
Thursday |
|
|
|
|
|
09:00 |
Lecture 6: Linear programming and Flux Balance Analysis |
DS|MP |
|
|
|
Lecture 7 : Validation and construction of models (Naming Conventions) |
MP|DS |
|
|
11:00 |
Break |
|
|
|
|
Lecture 8: Determination of minimal media requirements for Campylobacter jejuni |
DS |
|
|
|
P5: Determination of minimal media requirements for Campylobacter jejuni |
|
DS |
|
13:00 |
Lunch |
|
|
|
PM |
Lecture 9: Phaeodactylum tricornutm for biofuel synthesis |
DS |
|
|
|
P6. Identifying pathways for TAG synthesis in P. tricornutm |
All |
|
|
16:45 |
close |
|
|
Friday |
AM |
|
|
|
|
09:00 |
Lecture 10. Cupriavadus necator |
NP |
|
|
|
P6 (ctd) P7: KOs for ethelene production in C. necator |
|
|
|
13:00 |
Lunch |
|
|
|
14:00 |
Concluding remarks, discussion, feedback |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|