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| ||Monday ||AM ''' ''' || || || || | ||Monday || ''' ''' || || || || |
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| || || ||P2. Introduction to python ||[[Meetings/Nottingham2022/Prac2|Prac2]]||All|| ||Tuesday ''' ''' ||AM ''' ''' || || || || |
|| || ||P2. Introduction to python ||[[Meetings/Nottingham2022/Prac2|Prac2]] ||All || ||Tuesday ''' ''' || ''' ''' || || || || |
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| || ||10: 00||Lecture: Introduction to metabolic modelling|| ||DF|| || ||11:00||Lecture: Null space, subsets and elementary modes ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L4.pdf|Slides]] ||CS || |
|| ||10: 00 ||Lecture: Introduction to metabolic modelling || ||DF || || ||11:00 ||Lecture: Null space, subsets and elementary modes ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L4.pdf|Slides]] ||CS || |
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| || ||14:00||P3. Null space, subsets and elementary modes||[[Meetings/Nottingham2022/Prac3|Prac3]]||All|| || ||16:00||Lecture: Construction and curation of metabolic GSMs|| ||TD/PV|| || ||16:00 ''' ''' || || ||DF || |
|| ||14:00 ||P3. Null space, subsets and elementary modes ||[[Meetings/Nottingham2022/Prac3|Prac3]] ||All || || ||16:00 ||Lecture: Construction and curation of metabolic GSMs || ||TD/PV || |
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| || ||9:00||P3 continued ...|| || || || ||10:00||Lecture. Biotechnological applications of elementary modes analysis||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L5.pdf|Slides]]||DF|| || ||11:00||P4. Elementary Modes of the Woods-Ljungdahl Pathway||[[Meetings/Nottingham2022/Prac4|Prac4]]||All|| |
|| ||9:00 ||P3 continued ... || || || || ||10:00 ||Lecture. Biotechnological applications of elementary modes analysis ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L5.pdf|Slides]] ||DF || || ||11:00 ||P4. Elementary Modes of the Woods-Ljungdahl Pathway ||[[Meetings/Nottingham2022/Prac4|Prac4]] ||All || |
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!! Under Construction - Contents Liable to Change !!
Workshop on Metabolic Modelling
Nottingham 2024
Tutors
- Mark Poolman (MP: Oxford Brookes University)
- Trunil Desai (DS: Oxford Brookes University)
- Pareena Verma (PV: Oxford Brookes University)
- Cristiana Sebu (CS: University of Malta)
- Prof. David Fell (DF: Oxford Brookes University ) - Online
Reading List
A reading list for topics covered in the course is provided here
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Monday |
|| || || ||
09/12/2024 |
09:00 |
Arrival, Admin & Registration |
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PM |
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12:00 |
Lunch |
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13:00 |
Welcome and introduction to the course. Outline of the week. |
|
MP et al |
|
14:00 |
Lecture: Introduction to python |
MP |
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|
Tea/coffee |
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15:00 |
P1. Computers: checking internet connectivity, software installation.-> P2 |
Installation of ScrumPy. |
All |
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P2. Introduction to python |
All |
|
Tuesday |
|| || || ||
|
09:00 |
P2. Python continued ... |
All |
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10: 00 |
Lecture: Introduction to metabolic modelling |
|
DF |
|
11:00 |
Lecture: Null space, subsets and elementary modes |
CS |
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|
13:00 |
Lunch |
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14:00 |
P3. Null space, subsets and elementary modes |
All |
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|
16:00 |
Lecture: Construction and curation of metabolic GSMs |
|
TD/PV |
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Wednesday |
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|
9:00 |
P3 continued ... |
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10:00 |
Lecture. Biotechnological applications of elementary modes analysis |
DF |
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11:00 |
P4. Elementary Modes of the Woods-Ljungdahl Pathway |
All |
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09:00 |
Lecture: Linear programming and Flux Balance Analysis |
MP |
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Lecture: Validation and construction of models |
TD |
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11:00 |
Break |
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Lecture: Determination of minimal media requirements for Campylobacter jejuni |
PV |
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P5: Determination of minimal media requirements for Campylobacter jejuni |
All |
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13:00 |
Lunch |
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|
PM |
Lecture: Phaeodactylum tricornutm for biofuel synthesis |
DS |
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P6. Identifying pathways for TAG synthesis in P. tricornutm |
All |
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16:45 |
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Thursday |
AM |
|
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|
|
09:00 |
Lecture. Cupriavadus necator |
NP |
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P6 (ctd) P7: KOs for ethylene production in C. necator |
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13:00 |
Lunch |
|
|
|
14:00 |
Practical or Lecture here (LPEMs ?? Reaction CCs ??) |
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Friday |
AM |
|
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|
|
09:00 |
Complete unfinished practicals |
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11:00 |
General discussion. AOB |
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13:00 |
Lunch |
||
|
14:00 |
Go Home ! |