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!! Under Construction - Contents Liable to Change !!
Workshop on Metabolic Modelling
Nottingham 2024
Tutors
- Mark Poolman (MP: Oxford Brookes University)
- Trunil Desai (DS: Oxford Brookes University)
- Pareena Verma (PV: Oxford Brookes University)
- Cristiana Sebu (CS: University of Malta)
- Prof. David Fell (DF: Oxford Brookes University ) - Online
Reading List
A reading list for topics covered in the course is provided here
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Monday |
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09/12/2024 |
09:00 |
Arrival, Admin & Registration |
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PM |
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12:00 |
Lunch |
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13:00 |
Welcome and introduction to the course. Outline of the week. |
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MP et al |
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14:00 |
Lecture: Introduction to python |
MP |
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Tea/coffee |
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15:00 |
P1. Computers: checking internet connectivity, software installation.-> P2 |
Installation of ScrumPy. |
All |
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P2. Introduction to python |
All |
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Tuesday |
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09:00 |
P2. Python continued ... |
All |
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10: 00 |
Lecture: Introduction to metabolic modelling |
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DF |
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11:00 |
Lecture: Null space, subsets and elementary modes |
CS |
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13:00 |
Lunch |
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14:00 |
P3. Null space, subsets and elementary modes |
All |
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16:00 |
Lecture: Construction and curation of metabolic GSMs |
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TD/PV |
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Wednesday |
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9:00 |
P3 continued ... |
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10:00 |
Lecture. Biotechnological applications of elementary modes analysis |
DF |
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11:00 |
P4. Elementary Modes of the Woods-Ljungdahl Pathway |
All |
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11:00 |
P4. Elementary Modes of the Woods-Ljungdahl Pathway |
All |
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09:00 |
Lecture: Linear programming and Flux Balance Analysis |
MP |
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Lecture: Validation and construction of models |
TD |
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11:00 |
Break |
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Lecture: Determination of minimal media requirements for Campylobacter jejuni |
PV |
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P5: Determination of minimal media requirements for Campylobacter jejuni |
All |
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13:00 |
Lunch |
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PM |
Lecture: Phaeodactylum tricornutm for biofuel synthesis |
DS |
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P6. Identifying pathways for TAG synthesis in P. tricornutm |
All |
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16:45 |
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Thursday |
AM |
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09:00 |
Lecture. Cupriavadus necator |
NP |
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P6 (ctd) P7: KOs for ethylene production in C. necator |
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13:00 |
Lunch |
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14:00 |
Practical or Lecture here (LPEMs ?? Reaction CCs ??) |
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Friday |
AM |
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09:00 |
Complete unfinished practicals |
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11:00 |
General discussion. AOB |
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13:00 |
Lunch |
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14:00 |
Go Home ! |
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