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| = Under Construction - Contents Liable to Change = | = !! Under Construction - Contents Liable to Change !! = |
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| . A reading list for topics covered in the course is provided [[Meetings/Nottingham2022/Reading|here]] (updated). | . A reading list for topics covered in the course is provided [[Meetings/Nottingham2022/Reading|here]] |
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| ||Tuesday ||AM ''' ''' || || || || ||03/04/22 ||09:00 ||Arrival, Admin & Registration || || || |
||Monday ||AM ''' ''' || || || || ||09/12/2024 ||09:00 ||Arrival, Admin & Registration || || || |
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| || || ||Lecture 1: Young microbiologists need models not critics ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L1.pdf|Slides]] ||JW || | || || ||Lecture 1: ( Keynote DF online?) ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L1.pdf|Slides]] || || |
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| || || ||Close || || || ||Wednesday ''' ''' ||AM ''' ''' || || || || |
|| || || || || || ||Tuesday ''' ''' ||AM ''' ''' || || || || |
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| || || ||Lecture 4: Null space, subsets and elementary modes ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L4.pdf|Slides]] ||MP || | || || ||Lecture 4: Null space, subsets and elementary modes ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L4.pdf|Slides]] ||CS || |
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| ||Thursday ''' ''' || || || || || | ||Wednesday ''' ''' || || || || || |
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| || || ||Lecture 7 : Validation and construction of models ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L7.pdf|Slides]] ||DS || | || || ||Lecture 7 : Validation and construction of models ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L7.pdf|Slides]] ||TD || |
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| || || ||P5: Determination of minimal media requirements for ''Campylobacter jejuni'' ||[[https://mudsharkstatic.brookes.ac.uk/Nottingham2022/P5|Prac5]] ||DS || | || || ||P5: Determination of minimal media requirements for ''Campylobacter jejuni'' ||[[https://mudsharkstatic.brookes.ac.uk/Nottingham2022/P5|Prac5]] ||All || |
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| || ||16:45 ||close || || || ||Friday ''' ''' ||AM ''' ''' || || || || |
|| ||16:45 || || || || || || || || || || ||Thursday ''' ''' ||AM ''' ''' || || || || |
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| || ||14:00 ||Concluding remarks, discussion, feedback || || || | || ||14:00 ||Practical or Lecture here (LPEMs ?? Reaction CCs ??) || || || |
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| || || || || | ||Friday ||AM || || || || || ||09:00 ||Complete unfinnished practicals || || || || ||11:00 ||General discussion. AOB || || || || ||13:00 ||Lunch || || ||14:00 ||Go Home ! || |
!! Under Construction - Contents Liable to Change !!
Workshop on Metabolic Modelling
Nottingham 2024
Tutors
- Mark Poolman (MP: Oxford Brookes University)
- Trunil Desai (DS: Oxford Brookes University)
- Pareena Verma (PV: Oxford Brookes University)
- Cristiana Sebu (CS: University of Malta)
Reading List
A reading list for topics covered in the course is provided here
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Monday |
AM |
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09/12/2024 |
09:00 |
Arrival, Admin & Registration |
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PM |
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12:00 |
Lunch |
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13:00 |
Welcome and introduction to the course. Outline of the week. |
|
MP et al |
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Lecture 1: ( Keynote DF online?) |
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Lecture 2: Introduction to metabolic modelling. Mathematical representation of metabolic networks. |
DF |
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Tea/coffee |
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Lecture 3: Python and computational representation of metabolic networks. |
MP |
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P1. Computers: checking internet connectivity, software installation. |
Installation of ScrumPy. |
All |
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Tuesday |
AM |
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09:00 |
P2. Python and ScrumPy |
All |
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Lecture 4: Null space, subsets and elementary modes |
CS |
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11:00 |
Break |
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P3. Null space, subsets and elementary modes |
All |
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13:00 |
Lunch |
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|
PM |
Lecture 5. Biotechnological applications of elementary modes analysis |
DF |
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P4. Elementary Modes of the Woods-Ljungdahl Pathway |
All |
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Wednesday |
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09:00 |
Lecture 6: Linear programming and Flux Balance Analysis |
MP |
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Lecture 7 : Validation and construction of models |
TD |
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11:00 |
Break |
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Lecture 8: Determination of minimal media requirements for Campylobacter jejuni |
DS |
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P5: Determination of minimal media requirements for Campylobacter jejuni |
All |
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13:00 |
Lunch |
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PM |
Lecture 9: Phaeodactylum tricornutm for biofuel synthesis |
DS |
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P6. Identifying pathways for TAG synthesis in P. tricornutm |
All |
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16:45 |
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Thursday |
AM |
|
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09:00 |
Lecture 10. Cupriavadus necator |
NP |
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P6 (ctd) P7: KOs for ethelene production in C. necator |
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13:00 |
Lunch |
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14:00 |
Practical or Lecture here (LPEMs ?? Reaction CCs ??) |
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Friday |
AM |
|
|
|
|
09:00 |
Complete unfinnished practicals |
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11:00 |
General discussion. AOB |
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13:00 |
Lunch |
||
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14:00 |
Go Home ! |