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| || ||15:00 ||Lecture: ''Phaeodactylum tricornutm'' || Slides ||PV || || || ||P5: ''Phaeodactylum tricornutm'' || Prac5 ||All || || ||PM ''' ''' ||Lecture: ''Phaeodactylum tricornutm'' for biofuel synthesis ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L9.pdf|Slides]] ||DS || || || ||P6. Identifying pathways for TAG synthesis in ''P. tricornutm'' ||[[https://mudsharkstatic.brookes.ac.uk/Nottingham2022/P6|Prac6]] ||All || || ||16:45 || || || || |
|| ||15:00 ||Lecture: ''Phaeodactylum tricornutm'' ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L9.pdf|Slides]] ||PV || || || ||P5: ''Phaeodactylum tricornutm'' ||Prac5 ||All || |
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| || ||09:00 ||Lecture. ''Cupriavadus necator'' ''' ''' ''' ''' ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L10.pdf|Slides]] ||NP || || || ||P6 (ctd) P7: KOs for ethylene production in ''C. necator'' ||[[https://mudsharkstatic.brookes.ac.uk/Nottingham2022/P7|Prac7]] || || |
|| ||09:00 ||P5 continued ||- ||- || || ||10:00 ||Lecture: Correlation coefficients and LPEMs ||Slides ||CS || |
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| || ||14:00 ||Practical or Lecture here (LPEMs ?? Reaction CCs ??) || || || | || ||14:00 ||P7. LPEM? || ||All || |
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| || ||09:00 ||Complete unfinished practicals || || || || ||11:00 ||General discussion. AOB || || || || ||13:00 ||Lunch || |
|| ||09:00 ||Discussion || ||All || || ||12:00 ||Lunch || |
!! Under Construction - Contents Liable to Change !!
Workshop on Metabolic Modelling
Nottingham 2024
Tutors
- Mark Poolman (MP: Oxford Brookes University)
- Trunil Desai (DS: Oxford Brookes University)
- Pareena Verma (PV: Oxford Brookes University)
- Cristiana Sebu (CS: University of Malta)
- Prof. David Fell (DF: Oxford Brookes University ) - Online
Reading List
A reading list for topics covered in the course is provided here
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Monday |
AM |
|
|
|
09/12/2024 |
09:00 |
Arrival, Admin & Registration |
|
|
|
PM |
|
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|
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12:00 |
Lunch |
|
|
|
13:00 |
Welcome and introduction to the course. Outline of the week. |
|
MP et al |
|
14:00 |
Lecture: Introduction to python and metabolic modelling |
MP |
|
|
|
Tea/coffee |
|
|
|
15:00 |
P1. Computers: checking internet connectivity, software installation.-> P2 |
Installation of ScrumPy. |
All |
|
16:00 |
P2. Introduction to python |
|
All |
Tuesday |
AM |
|
|
|
|
09:00 |
P2. Pythoncontinued ... |
All |
|
|
10:00 |
Lecture Intruction to metabolic modelling |
|
DF |
|
11:00 |
Lecture: Null space, subsets and elementary modes |
CS |
|
|
13:00 |
Lunch |
|
|
|
14:00 |
P3. practicalsame as india P3 |
All |
|
|
16:00 |
Lecture: Construction and curation of GSMs |
TD/PV |
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Wednesday |
|
|
|
|
|
09:00 |
P3 continued |
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All |
|
10:00 |
Lecture. Biotechnological applications of elementary modes analysis |
DF |
|
|
11:00 |
P4. Elementary Modes of the Woods-Ljungdahl Pathway |
All |
|
|
13:00 |
Lunch |
|
|
|
14:00 |
Lecture: Linear programming and flux balance analysis |
Slides |
MP |
|
15:00 |
Lecture: Phaeodactylum tricornutm |
PV |
|
|
|
P5: Phaeodactylum tricornutm |
Prac5 |
All |
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Thursday |
AM |
|
|
|
|
09:00 |
P5 continued |
- |
- |
|
10:00 |
Lecture: Correlation coefficients and LPEMs |
Slides |
CS |
|
13:00 |
Lunch |
|
|
|
14:00 |
P7. LPEM? |
|
All |
|
|
|
|
|
Friday |
AM |
|
|
|
|
09:00 |
Discussion |
|
All |
|
12:00 |
Lunch |
||
|
14:00 |
Go Home ! |