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| * Pareena Verma (PV: Oxford Brookes University) | |
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| || ||15:00 ||'''P1''': Computers: checking internet connectivity, software installation.-> P2 ||[[https://gitlab.com/MarkPoolman/scrumpy/-/wikis/Manual/Install|Installation]] of [[https://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]]. ||All || | || ||15:00 ||'''P1''': Computers: checking internet connectivity, software installation.-> P2 ||[[Meetings/Nottingham2024/Installation|Installing ScrumPy]]. ||All || |
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| || ||14:00 ||'''P3:''' Basic Model Properties ||[[Meetings/Nottingham2024/Prac3|Prac3]] [[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/ScrumPySlides.pdf|Slides]] ||All / MP || || ||16:00 ||'''L4: '''Construction and Curation of GSMs ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/L4.pdf|Slides]] ||TD/PV || |
|| ||14:00 ||'''P3:''' Basic Model Properties ||[[Meetings/Nottingham2024/Prac3|Prac3]] [[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/P3.pdf|Slides]] ||All / MP || || ||16:00 ||'''L4: '''Construction and Curation of GSMs ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/L4.pdf|Slides]] ||TD || |
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| || ||15:00 ||'''L7: ''' ''Phaeodactylum tricornutm **22/L9**'' ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/L7.pdf|Slides]] ||PV || || || ||'''P5: ''' ''Phaeodactylum tricornutm'' ||[[Meetings/Nottingham2024/Prac5|Prac5]] ||All || |
|| ||15:00 ||'''L7: ''' ''Phaeodactylum tricornutum'' ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2024/L7.pdf|Slides]] ||MP || || || ||'''P5: '''TAG synthesis in''' '''''P. tricornutum'' ||[[Meetings/Nottingham2024/Prac5|Prac5]] ||All || |
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| || ||14:00 ||P7. LPEM? || ||All || | || ||14:00 ||'''P6:''' Elementary Modes in the'' A. woodii ''model ||[[Meetings/Nottingham2024/Prac6|Prac6]] ||All || |
(Under Construction - Contents Liable to Change)
Workshop on Metabolic Modelling
Nottingham 2024
Tutors
- Mark Poolman (MP: Oxford Brookes University)
- Trunil Desai (DS: Oxford Brookes University)
- Cristiana Sebu (CS: University of Malta)
- Prof. David Fell (DF: Oxford Brookes University ) - Online
Reading List
A reading list for topics covered in the course is provided here
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Monday |
AM |
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09/12/2024 |
09:00 |
Arrival, Admin & Registration |
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PM |
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12:00 |
Lunch |
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13:00 |
Welcome and introduction to the course. Outline of the week. |
|
MP et al |
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14:00 |
L1: Introduction to python and metabolic modelling |
MP |
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Tea/coffee |
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15:00 |
P1: Computers: checking internet connectivity, software installation.-> P2 |
All |
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16:00 |
P2: Introduction to Python |
All |
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Tuesday |
AM |
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09:00 |
P2: Introduction to Python (continued) |
All |
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10:00 |
L2: Introduction to metabolic modelling |
DF |
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11:00 |
L3: Null space, subsets and elementary modes |
CS |
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13:00 |
Lunch |
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14:00 |
P3: Basic Model Properties |
All / MP |
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16:00 |
L4: Construction and Curation of GSMs |
TD |
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Wednesday |
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09:00 |
P3: (continued) |
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All |
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10:00 |
L5: Biotechnological applications of elementary modes analysis |
DF |
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11:00 |
P4. Elementary Modes of the Woods-Ljungdahl Pathway |
All |
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13:00 |
Lunch |
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14:00 |
L6: Linear programming and flux balance analysis |
MP |
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15:00 |
L7: Phaeodactylum tricornutum |
MP |
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P5: TAG synthesis in P. tricornutum |
All |
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Thursday |
AM |
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09:00 |
P5: (continued) |
- |
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10:00 |
L8: Reaction Correlation Coefficients and LPEMs |
CS |
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13:00 |
Lunch |
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14:00 |
P6: Elementary Modes in the A. woodii model |
All |
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Friday |
AM |
|
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09:00 |
Discussion |
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All |
|
12:00 |
Lunch |
||
|
14:00 |
Go Home ! |