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| || ||15:00 ||'''P1''': Computers: checking internet connectivity, software installation.-> P2 ||[[https://gitlab.com/MarkPoolman/scrumpy/-/wikis/Manual/Install|Installation]] of [[https://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]]. ||All || | || ||15:00 ||'''P1''': Computers: checking internet connectivity, software installation.-> P2 ||[[Installation]] of [[ScrumPy]]. ||All || |
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| || ||14:00 ||'''P6:''' (? LPEM ? TBC ?) ||[[https://mudshark.brookes.ac.uk/Meetings/Nottingham2024/Prac6|Prac6]]||All || | || ||14:00 ||'''P6:''' (? LPEM ? TBC ?) ||[[https://mudshark.brookes.ac.uk/Meetings/Nottingham2024/Prac6|Prac6]] ||All || |
(Under Construction - Contents Liable to Change)
Workshop on Metabolic Modelling
Nottingham 2024
Tutors
- Mark Poolman (MP: Oxford Brookes University)
- Trunil Desai (DS: Oxford Brookes University)
- Pareena Verma (PV: Oxford Brookes University)
- Cristiana Sebu (CS: University of Malta)
- Prof. David Fell (DF: Oxford Brookes University ) - Online
Reading List
A reading list for topics covered in the course is provided here
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Monday |
AM |
|
|
|
09/12/2024 |
09:00 |
Arrival, Admin & Registration |
|
|
|
PM |
|
|
|
|
12:00 |
Lunch |
|
|
|
13:00 |
Welcome and introduction to the course. Outline of the week. |
|
MP et al |
|
14:00 |
L1: Introduction to python and metabolic modelling |
MP |
|
|
|
Tea/coffee |
|
|
|
15:00 |
P1: Computers: checking internet connectivity, software installation.-> P2 |
Installation of ScrumPy. |
All |
|
16:00 |
P2: Introduction to Python |
All |
|
Tuesday |
AM |
|
|
|
|
09:00 |
P2: Introduction to Python (continued) |
All |
|
|
10:00 |
L2: Introduction to metabolic modelling |
DF |
|
|
11:00 |
L3: Null space, subsets and elementary modes |
CS |
|
|
13:00 |
Lunch |
|
|
|
14:00 |
P3: Basic Model Properties |
All / MP |
|
|
16:00 |
L4: Construction and Curation of GSMs |
TD/PV |
|
|
|
|
|
|
Wednesday |
|
|
|
|
|
09:00 |
P3: (continued) |
|
All |
|
10:00 |
L5: Biotechnological applications of elementary modes analysis |
DF |
|
|
11:00 |
P4. Elementary Modes of the Woods-Ljungdahl Pathway |
All |
|
|
13:00 |
Lunch |
|
|
|
14:00 |
L6: Linear programming and flux balance analysis |
MP |
|
|
15:00 |
L7: Phaeodactylum tricornutm **22/L9** |
PV |
|
|
|
P5: Phaeodactylum tricornutm |
All |
|
|
|
|
|
|
Thursday |
AM |
|
|
|
|
09:00 |
P5: (continued) |
- |
|
|
10:00 |
L8: Reaction Correlation Coefficients and LPEMs |
CS |
|
|
13:00 |
Lunch |
|
|
|
14:00 |
P6: (? LPEM ? TBC ?) |
All |
|
|
|
|
|
|
Friday |
AM |
|
|
|
|
09:00 |
Discussion |
|
All |
|
12:00 |
Lunch |
||
|
14:00 |
Go Home ! |