Portugal PhD Programme, Systems Biology Module

Metabolic Modelling with reference to Plant Biochemistry

Lecture slides

  1. Introductory lecture; elementary modes analysis

  2. Application of linear programming to plant metabolism:

    1. Summary of photosynthetic metabolism

    2. Revision of LP/FBA, with additional analysis techniques

    3. Application of FBA to a GSM of rice

    4. Explaining metabolism of Calvin Cycle knokouts with a GSM of Arabidopsis

  3. Analysis of photorespiration.

Other resources