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== Practical 1 - Structural Properties of the Calvin Cycle and Diacetyl Synthesis == == Practical 1 - Structural Properties of the Calvin Cycle ==
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 1. [[http://Mudsharkstatic.brookes.ac.uk/Pune2016/P1/Calvin.spy|Download]] the Calvin cycle model.
 1. Start !ScrumPy and load the model:
 1. {{{>>> m = ScrumPy.Model("Calvin.spy")}}}		  1.
 [[http://Mudsharkstatic.brookes.ac.uk/Pune2016/P1/Calvin.spy|Download]] the Calvin cycle model.

 1.
 Start !ScrumPy and load the model:

 1.
 {{{>>> m = ScrumPy.Model("Calvin.spy")}}}

Practical 1 - Structural Properties of the Calvin Cycle

Introduction

In this practical we will investigate the general structural properites of the photosynthetic Calvin Cycle (see Slide 7 from the first talk) and seek to answer a specific question that is hard to answer simply by looking at the network diagram: "how can starch degradation act as a carbon source to generate triose phosphate?"

Methods

Part 1:

  1. Download the Calvin cycle model.

  2. Start ScrumPy and load the model:

  3. >>> m = ScrumPy.Model("Calvin.spy")

  4. Locate the reactions and metabolites in the model on the network diagram.
  5. As far as possible, identify the routes by which triose phosphate species may be identified.

None: Meetings/Pune2016/P1 (last edited 2016-03-15 02:45:34 by mark)