Differences between revisions 11 and 29 (spanning 18 versions)

Modelling Workshop, Pune, 2016

Download the Virtualbox image and import it into virtual box (File/Import appliance). There is single user with the id 'scrumpy' with the password 'scrumpy'. 'scrumpy' is also the root password. This image is for pre-workshop testing and may well change!

Follow this link if you wish to install ScrumPy on a Linux computer.

Draft timetable

Mornings, 9:30 -12:30 (Monday 10:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)

Time	Activity	Resources	Who
Mon 14th, AM	Registration and admin
Mon 14th, PM	Talk: Indroductory theory	Slides	Mark
	Talk: Python, object-orientation and models.	Slides	Mark
	Practical 0: Checking ScrumPy installation		All
Tue 15th, AM	Talk: Structural analysis of small models.	Slides
Tue 15th, AM	Practical 1: Structural analysis of small models	Instructions	All
Tue 15th, PM	Talk: Construction of GSMs OR E.M. Algorithms	Slides	Hassan
	Talk: Intro LP/FBA(Could include Construction of GSMs here)	Slides
	Practical 1: (continued)	Instructions	All
Wed 16th, AM	Case studies in biotechnology and metabolic engineering (link needs updating!)	Slides	David
	Talk: Analysis of GSMs	Slides
	Practical 2:	Instructions
Wed 16th, PM	Practical 2: (continued)	Instructions
	Content	Slides
	Concluding remarks and presentation of certificates

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-Mornings, 9:30 -12:30 (Monday 10:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]]
||'''Time''' ||'''Activity''' ||'''Resources''' ||'''Who''' ||
+Mornings, 9:30 -12:30 (Monday 10:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)
||<tablewidth="860px" tableheight="449px">'''Time''' ||'''Activity''' ||'''Resources''' ||'''Who''' ||
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-||<style="text-align:center" |3>Mon 14th, PM ||'''Talk:''' Indroductory theory ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]] ||<style="text-align:center" |1>                        ||
||'''Talk:''' Python, object-orientation and models. ||<style="text-align:left;" |1>[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]] ||<style="text-align:center" |1>Mark ||
+||<style="text-align:center" |3>Mon 14th, PM ||'''Talk:''' Indroductory theory ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]] ||<style="text-align:center" |1>Mark ||
||'''Talk:''' Python, object-orientation and models. ||<style="text-align:left;" |1>[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L2/Slides.pdf|Slides]] ||<style="text-align:center" |1>Mark ||
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-||<style="text-align:center" |2>Tue 15th, AM ||'''Talk:''' Structural analysis of small models. ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]] ||<style="text-align:center" |1>                        ||
||'''Practical 1''': Structural analysis of small models ||<style="text-align:center" |1>                        ||<style="text-align:center" |1>All ||
||<style="text-align:center" |3>Tue 15th, PM ||'''Talk:''' Construction of Genome-scale models. ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]] ||<style="text-align:center" |1>                        ||
||'''Talk:''' Intro LP/FBA ||<style="text-align:center" |1>                        ||<style="text-align:center" |1>                        ||
||'''Practical 1''': (continued) ||<style="text-align:center" |1>                        ||<style="text-align:center" |1>All ||
||<style="text-align:center" |3>Wed 16th, AM ||[[http://mudsharkstatic.brookes.ac.uk/Delhi2013/Slides/wshop2_mca3.pdf|Case studies in biotechnology and metabolic engineering]] (link need updating!) ||                        [[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]]||<style="text-align:center" |1>David ||
||'''Talk:''' Analysis of GSMs ||
+||<style="text-align:center" |2>Tue 15th, AM ||'''Talk:''' Structural analysis of small models. ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L3/Slides.pdf|Slides]] ||<style="text-align:center" |1>                        ||
||'''Practical 1''': Structural analysis of small models ||<style="text-align:center" |1>[[Meetings/Pune2016/P1|Instructions]] ||<style="text-align:center" |1>All ||
||<style="text-align:center" |3>Tue 15th, PM ||'''Talk:''' Construction of GSMs OR E.M. Algorithms ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L4/Slides.pdf|Slides]] ||<style="text-align:center" |1>Hassan ||
||'''Talk:''' Intro LP/FBA(Could include Construction of GSMs here) ||<style="text-align:center" |1>[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L5/Slides.pdf|Slides]] ||<style="text-align:center" |1>                        ||
||'''Practical 1''': (continued) ||<style="text-align:center" |1>[[Meetings/Pune2016/P1|Instructions]] ||<style="text-align:center" |1>All ||
||<style="text-align:center" |3>Wed 16th, AM ||[[http://mudsharkstatic.brookes.ac.uk/Delhi2013/Slides/wshop2_mca3.pdf|Case studies in biotechnology and metabolic engineering]] (link needs updating!) ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L6/Slides.pdf|Slides]] ||<style="text-align:center" |1>David ||
||'''Talk:''' Analysis of GSMs ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L7/Slides.pdf|Slides]] ||                        ||
||'''Practical 2:''' ||                        [[Meetings/Pune2016/P2|Instructions]]||                        ||
||<style="text-align:center" |3>Wed 16th, PM ||'''Practical 2''': (continued) ||                        [[Meetings/Pune2016/P1|Instructions]]||<style="text-align:center" |1>                        ||
||Content ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L8/Slides.pdf|Slides]] ||                        ||
||Concluding remarks and presentation of certificates ||                        ||                        ||
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'''Practical 2:''' Analysis of GSMs

All

Wed 16th, PM

'''Practical 2:''' (continued)

All

Concluding talk - what about?

(presentation of certificates ?)