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| Download the [[http://mudsharkstatic.brookes.ac.uk/Download/opt/ScrumPy-vm.ova|Virtualbox image]] and import it into virtual box (File/Import appliance). There is single user with the id 'scrumpy' with the password 'scrumpy'. 'scrumpy' is also the root password. This image is for pre-workshop testing and may well change! | Download the [[http://mudsharkstatic.brookes.ac.uk/Download/opt/ScrumPy-vm.ova|Virtualbox image]] and import it into virtual box (File/Import appliance). There is single user with the id 'scrumpy' with the password 'scrumpy'. 'scrumpy' is also the root password. This image is for pre-workshop testing and may well change! |
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| == Draft timetable == Mornings, 9:30 -12:30 (Monday 10:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest) |
== Timetable (Subject to Change) == Mornings, 9:30 -12:30 (Monday 11:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest) |
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| ||Mon 14th, AM ||Registration and admin || || || | ||<style="text-align:center" |2>Mon 14th, AM ||Registration and admin ||<style="text-align:center" |1> ||<style="text-align:center" |1> || ||Welcome Talk ||<style="text-align:center" |1> ||<style="text-align:center" |1>Anu || |
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| ||'''Practical 0:''' Checking !ScrumPy installation ||<style="text-align:center" |1> ||<style="text-align:center" |1>All || ||<style="text-align:center" |2>Tue 15th, AM ||'''Talk:''' Structural analysis of small models. ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L3/Slides.pdf|Slides]] ||<style="text-align:center" |1> || |
||'''Practical 0:''' Checking !ScrumPy Installationand Familiarisation ||<style="text-align:center" |1>[[Meetings/Pune2016/P0|Instructions]] ||<style="text-align:center" |1>All || ||<style="text-align:center" |2>Tue 15th, AM ||'''Talk:''' Structural analysis of small models. ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L3/Slides.pdf|Slides]] ||<style="text-align:center" |1>David || |
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| ||<style="text-align:center" |3>Tue 15th, PM ||'''Talk:''' Construction of GSMs OR E.M. Algorithms ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L4/Slides.pdf|Slides]] ||<style="text-align:center" |1>Hassan || ||'''Talk:''' Intro LP/FBA(Could include Construction of GSMs here) ||<style="text-align:center" |1>[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L5/Slides.pdf|Slides]] ||<style="text-align:center" |1> || |
||<style="text-align:center" |3>Tue 15th, PM ||'''Talk:''' Algorithms for calculating Elementary Modes ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L4/Slides.pdf|Slides]] ||<style="text-align:center" |1>Hassan || ||'''Talk:''' Linear Programming and Genome Scale Models ||<style="text-align:center" |1>[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L5/Slides.pdf|Slides]] ||<style="text-align:center" |1>Mark || |
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| ||<style="text-align:center" |3>Wed 16th, AM ||[[http://mudsharkstatic.brookes.ac.uk/Delhi2013/Slides/wshop2_mca3.pdf|Case studies in biotechnology and metabolic engineering]] (link needs updating!) ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L6/Slides.pdf|Slides]] ||<style="text-align:center" |1>David || ||'''Talk:''' Analysis of GSMs ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L7/Slides.pdf|Slides]] || || ||'''Practical 2:''' || [[Meetings/Pune2016/P2|Instructions]]|| || ||<style="text-align:center" |3>Wed 16th, PM ||'''Practical 2''': (continued) || [[Meetings/Pune2016/P1|Instructions]]||<style="text-align:center" |1> || ||Content ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L8/Slides.pdf|Slides]] || || |
||<style="text-align:center" |3>Wed 16th, AM ||''' Talk:''' Biotechnological Applications of Metabolic Network Analysis ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L6/Slides.pdf|Slides]] ||<style="text-align:center" |1>David || ||'''Talk:''' Analysis of GSMs - Novel antibiotic targets ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L7/Slides.pdf|Slides]] ||Hassan || ||'''Practical 2: '''Identifying Novel Antibiotic Targets in Salmonella ||[[Meetings/Pune2016/P2|Instructions]] || || ||<style="text-align:center" |3>Wed 16th, PM ||'''Practical 2''': (continued) ||[[Meetings/Pune2016/P2|Instructions]] ||<style="text-align:center" |1> || ||'''Talk:''' Metabolic engineering of Geobacillus ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L8/Slides.pdf|Slides]] ||Hassan || |
Modelling Workshop, Pune, 2016
Download the Virtualbox image and import it into virtual box (File/Import appliance). There is single user with the id 'scrumpy' with the password 'scrumpy'. 'scrumpy' is also the root password. This image is for pre-workshop testing and may well change!
Follow this link if you wish to install ScrumPy on a Linux computer.
Timetable (Subject to Change)
Mornings, 9:30 -12:30 (Monday 11:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)
Time |
Activity |
Resources |
Who |
Mon 14th, AM |
Registration and admin |
|
|
Welcome Talk |
|
Anu |
|
Mon 14th, PM |
Talk: Indroductory theory |
Mark |
|
Talk: Python, object-orientation and models. |
Mark |
||
Practical 0: Checking ScrumPy Installationand Familiarisation |
All |
||
Tue 15th, AM |
Talk: Structural analysis of small models. |
David |
|
Practical 1: Structural analysis of small models |
All |
||
Tue 15th, PM |
Talk: Algorithms for calculating Elementary Modes |
Hassan |
|
Talk: Linear Programming and Genome Scale Models |
Mark |
||
Practical 1: (continued) |
All |
||
Wed 16th, AM |
Talk: Biotechnological Applications of Metabolic Network Analysis |
David |
|
Talk: Analysis of GSMs - Novel antibiotic targets |
Hassan |
||
Practical 2: Identifying Novel Antibiotic Targets in Salmonella |
|
||
Wed 16th, PM |
Practical 2: (continued) |
|
|
Talk: Metabolic engineering of Geobacillus |
Hassan |
||
Concluding remarks and presentation of certificates |
|
|