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Modelling Workshop, Pune, 2016

Download the Virtualbox image and import it into virtual box (File/Import appliance). There is single user with the id 'scrumpy' with the password 'scrumpy'. 'scrumpy' is also the root password. This image is for pre-workshop testing and may well change!

Follow this link if you wish to install ScrumPy on a Linux computer.

Draft timetable

Mornings, 9:30 -12:30 (Monday 10:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)

Time

Activity

Resources

Who

Mon 14th, AM

Registration and admin

Mon 14th, PM

Talk: Indroductory theory

Slides

Mark

Talk: Python, object-orientation and models.

Slides

Mark

Practical 0: Checking ScrumPy installation

All

Tue 15th, AM

Talk: Structural analysis of small models.

Slides

Practical 1: Structural analysis of small models

Instructions

All

Tue 15th, PM

Talk: Construction of GSMs OR E.M. Algorithms

Slides

Hassan

Talk: Intro LP/FBA(Could include Construction of GSMs here)

Slides

Practical 1: (continued)

Instructions

All

Wed 16th, AM

Case studies in biotechnology and metabolic engineering (link needs updating!)

Slides

David

Talk: Analysis of GSMs

Slides


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Practical 2:

Instructions

Wed 16th, PM

Practical 2: (continued)

Instructions


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Practical 2:

Instructions

Wed 16th, PM

Practical 2: (continued)

Instructions


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Content

Slides

Concluding remarks and presentation of certificates

None: Meetings/Pune2016 (last edited 2016-03-16 05:20:26 by mark)