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||'''Talk:''' Linear Programming and Genome Scale Models ||<style="text-align:center" |1>[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L5/Slides.pdf|Slides]] ||<style="text-align:center" |1> Mark|| | ||'''Talk:''' Linear Programming and Genome Scale Models ||<style="text-align:center" |1>[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L5/Slides.pdf|Slides]] ||<style="text-align:center" |1>Mark || |
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||<style="text-align:center" |3>Wed 16th, AM ||[[http://mudsharkstatic.brookes.ac.uk/Delhi2013/Slides/wshop2_mca3.pdf|Case studies in biotechnology and metabolic engineering]] (link needs updating!) ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L6/Slides.pdf|Slides]] ||<style="text-align:center" |1>David || | ||<style="text-align:center" |3>Wed 16th, AM ||''' Talk:''' Biotechnological Applications of Metabolic Network Analysis ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L6/Slides.pdf|Slides]] ||<style="text-align:center" |1>David || |
Modelling Workshop, Pune, 2016
Download the Virtualbox image and import it into virtual box (File/Import appliance). There is single user with the id 'scrumpy' with the password 'scrumpy'. 'scrumpy' is also the root password. This image is for pre-workshop testing and may well change!
Follow this link if you wish to install ScrumPy on a Linux computer.
Draft timetable (Subject to Change)
Mornings, 9:30 -12:30 (Monday 10:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)
Time |
Activity |
Resources |
Who |
Mon 14th, AM |
Registration and admin |
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Mon 14th, PM |
Talk: Indroductory theory |
Mark |
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Talk: Python, object-orientation and models. |
Mark |
||
Practical 0: Checking ScrumPy installation |
|
All |
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Tue 15th, AM |
Talk: Structural analysis of small models. |
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Practical 1: Structural analysis of small models |
All |
||
Tue 15th, PM |
Talk: Algorithms for calculating Elementary Modes |
Hassan |
|
Talk: Linear Programming and Genome Scale Models |
Mark |
||
Practical 1: (continued) |
All |
||
Wed 16th, AM |
Talk: Biotechnological Applications of Metabolic Network Analysis |
David |
|
Talk: Analysis of GSMs - Novel antibiotic targets |
Hassan |
||
Practical 2: |
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Wed 16th, PM |
Practical 2: (continued) |
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Talk: Metabolic engineering of Geobaccilus |
Hassan |
||
Concluding remarks and presentation of certificates |
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