Differences between revisions 6 and 14 (spanning 8 versions)

Modelling Workshop, Pune, 2016

Download the Virtualbox image and import it into virtual box (File/Import appliance). There is single user with the id 'scrumpy' with the password 'scrumpy'. 'scrumpy' is also the root password. This image is for pre-workshop testing and may well change!

Follow this link if you wish to install ScrumPy on a Linux computer.

Draft timetable

Mornings, 9:30 -12:30 (Monday 10:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)Slides

Time	Activity	Resources
Mon 14th, AM	Registration and admin
Mon 14th, PM	Talk: Indroductory theory	Slides
	Talk: Python, object-orientation and models.	Slides	Mark
	Practical 0: Checking ScrumPy installation		All
Tue 15th, AM	Talk: Structural analysis of small models.	Slides
Tue 15th, AM	Practical 1: Structural analysis of small models		All
Tue 15th, PM	Talk: Construction of Genome-scale models.	Slides
	Talk: Intro LP/FBA
	Practical 1: (continued)		All
Wed 16th, AM	Case studies in biotechnology and metabolic engineering (link need updating!)	Slides
	Talk: Analysis of GSMs	Slides
	Practical 2:

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-Mornings, 9:30 -12:30 (Monday 10:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)
||'''Time''' ||'''Activity''' ||'''Who''' ||
||Mon 14th, AM ||Registration and admin ||                        ||
||<style="text-align:center" |3>Mon 14th, PM ||Indroductory theory ||<style="text-align:center" |1>                        ||
||Python, object-orientation and models. ||<style="text-align:center" |1>                        ||
||Checking !ScrumPy installation (practical 0). ||<style="text-align:center" |1>                        ||
||<style="text-align:center" |2>Tue 15th, AM ||Structural analysis of small models (talk) ||<style="text-align:center" |1>                        ||
||Structural analysis of small models (practical 1) ||<style="text-align:center" |1>                        ||
||<style="text-align:center" |3>Tue 15th, PM ||Construction of Genome-scale models. (talk) ||<style="text-align:center" |1>                        ||
||Intro LP/FBA  (talk) ||<style="text-align:center" |1>                        ||
||Practical 1 continued ||<style="text-align:center" |1>                        ||
||<style="text-align:center" |3>Wed 16th, AM ||[[http://mudsharkstatic.brookes.ac.uk/Delhi2013/Slides/wshop2_mca3.pdf|Case studies in biotechnology and metabolic engineering]] (link need updating!) ||<style="text-align:center" |1>                        David||
||Analysis of GSMs (talk) ||<style="text-align:center" |1>                        ||
||Analysis of GSMs (practical 2) ||<style="text-align:center" |1>                        ||
||<style="text-align:center" |3>Wed 16th, PM ||Practical 2 continued ||<style="text-align:center" |1>                        ||
||Concluding talk ||<style="text-align:center" |1>                        ||
||(presentation of certificates ?) ||<style="text-align:center" |1>                        ||
+Mornings, 9:30 -12:30 (Monday 10:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]]
||<tablewidth="860px" tableheight="449px">'''Time''' ||'''Activity''' ||'''Resources''' ||                        ||
||Mon 14th, AM ||Registration and admin ||                        ||                        ||
||<style="text-align:center" |3>Mon 14th, PM ||'''Talk:''' Indroductory theory ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]] ||<style="text-align:center" |1>                        ||
||'''Talk:''' Python, object-orientation and models. ||<style="text-align:left;" |1>[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]] ||<style="text-align:center" |1>Mark ||
||'''Practical 0:''' Checking !ScrumPy installation ||<style="text-align:center" |1>                        ||<style="text-align:center" |1>All ||
||<style="text-align:center" |2>Tue 15th, AM ||'''Talk:''' Structural analysis of small models. ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]] ||<style="text-align:center" |1>                        ||
||'''Practical 1''': Structural analysis of small models ||<style="text-align:center" |1>                        ||<style="text-align:center" |1>All ||
||<style="text-align:center" |3>Tue 15th, PM ||'''Talk:''' Construction of Genome-scale models. ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]] ||<style="text-align:center" |1>                        ||
||'''Talk:''' Intro LP/FBA ||<style="text-align:center" |1>                        ||<style="text-align:center" |1>                        ||
||'''Practical 1''': (continued) ||<style="text-align:center" |1>                        ||<style="text-align:center" |1>All ||
||<style="text-align:center" |3>Wed 16th, AM ||[[http://mudsharkstatic.brookes.ac.uk/Delhi2013/Slides/wshop2_mca3.pdf|Case studies in biotechnology and metabolic engineering]] (link need updating!) ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]] ||<style="text-align:center" |1>                        ||
||'''Talk:''' Analysis of GSMs ||[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]] ||                        ||
||'''Practical 2:''' ||                        ||                                    ||