Differences between revisions 2 and 3
⇤ ← Revision 2 as of 2013-09-01 14:17:40 →
Size: 1404
Editor: hassan
Comment:
← Revision 3 as of 2018-01-15 12:24:13 → ⇥
Size: 1570
Editor: mark
Comment:
Deletions are marked like this. Additions are marked like this.
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{{{#! python {{{
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 x_CO2 + RuBP_ch -> 2 PGA_ch      ~          x_CO2 + RuBP_ch -> 2 PGA_ch
 ~
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PGK:
 PGA_ch + ATP_ch <> BPGA_ch + ADP_ch     ~ 		 PGK:
        PGA_ch + ATP_ch <> BPGA_ch + ADP_ch
 ~
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 BPGA_ch + x_NADPH_ch + x_Proton_ch <> x_NADP_ch + GAP_ch + Pi_ch 
 ~ 		        BPGA_ch + x_NADPH_ch + x_Proton_ch <> x_NADP_ch + GAP_ch + Pi_ch
        ~
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 GAP_ch <> DHAP_ch
 ~		         GAP_ch <> DHAP_ch
        ~
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 DHAP_ch + GAP_ch <> FBP_ch
 ~		         DHAP_ch + GAP_ch <> FBP_ch
       ~
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 FBP_ch -> F6P_ch + Pi_ch
  ~ 		         FBP_ch -> F6P_ch + Pi_ch
         ~
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 F6P_ch + GAP_ch <> E4P_ch + X5P_ch
 ~		         F6P_ch + GAP_ch <> E4P_ch + X5P_ch
        ~
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 E4P_ch + DHAP_ch <> SBP_ch
 ~		         E4P_ch + DHAP_ch <> SBP_ch
       ~
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TAL:
     E4P_ch + F6P_ch <> S7P_ch + GAP_ch
 ~
 		 #TAL:
#     E4P_ch + F6P_ch <> S7P_ch + GAP_ch
#        ~
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 SBP_ch -> S7P_ch + Pi_ch         ~          SBP_ch -> S7P_ch + Pi_ch
 ~
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 GAP_ch + S7P_ch <> X5P_ch + R5P_ch
 ~		         GAP_ch + S7P_ch <> X5P_ch + R5P_ch
       ~
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 R5P_ch <> Ru5P_ch
 ~		         R5P_ch <> Ru5P_ch
        ~
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 X5P_ch <> Ru5P_ch
 ~		         X5P_ch <> Ru5P_ch
        ~
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 Ru5P_ch + ATP_ch -> RuBP_ch + ADP_ch       ~          Ru5P_ch + ATP_ch -> RuBP_ch + ADP_ch
 ~
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  TP_Pi_apPGA:
 PGA_ch + x_Pi_cyt -> Pi_ch + x_PGA_cyt
 ~
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       TP_Pi_apPGA:
        PGA_ch + x_Pi_cyt -> Pi_ch + x_PGA_cyt
        ~
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 GAP_ch + x_Pi_cyt -> Pi_ch + x_GAP_cyt     ~         GAP_ch + x_Pi_cyt -> Pi_ch + x_GAP_cyt
 ~
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 DHAP_ch + x_Pi_cyt -> Pi_ch + x_DHAP_cyt
 ~
   		         DHAP_ch + x_Pi_cyt -> Pi_ch + x_DHAP_cyt
 ~
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 F6P_ch <> G6P_ch
 ~		         F6P_ch <> G6P_ch
        ~
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 G6P_ch <> G1P_ch
 ~		         G6P_ch <> G1P_ch
        ~
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 G1P_ch + ATP_ch -> ADP_ch + 2 Pi_ch + x_Starch_ch
 ~		         G1P_ch + ATP_ch -> ADP_ch + 2 Pi_ch + x_Starch_ch
        ~
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  StPase:
 x_Starch_ch + Pi_ch -> G1P_ch
 ~
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OPPpath:
 G6P_ch +2 x_NADP_ch -> 2 x_NADPH_ch +2 x_Proton_ch + Ru5P_ch + x_CO2
 ~
 		 StPase:
        x_Starch_ch + Pi_ch -> G1P_ch
        ~
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Light_react:
 ADP_ch + Pi_ch -> ATP_ch
 ~ 		#OPPpath:
# G6P_ch +2 x_NADP_ch -> 2 x_NADPH_ch +2 x_Proton_ch + Ru5P_ch + x_CO2
# ~
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Light_react:
        ADP_ch + Pi_ch -> ATP_ch
        ~		 

Structural()

# Calvin cycle + OPPP

Rubisco:
        x_CO2 + RuBP_ch -> 2 PGA_ch
        ~

PGK:
        PGA_ch + ATP_ch <> BPGA_ch + ADP_ch
        ~

G3Pdh:
        BPGA_ch + x_NADPH_ch + x_Proton_ch <> x_NADP_ch + GAP_ch + Pi_ch
        ~


TPI:
        GAP_ch <> DHAP_ch
        ~

Aldo:
        DHAP_ch + GAP_ch <>  FBP_ch
        ~
FBPase:
        FBP_ch -> F6P_ch + Pi_ch
         ~

TKL:
        F6P_ch + GAP_ch <> E4P_ch + X5P_ch
        ~


Aldo2:
        E4P_ch + DHAP_ch <> SBP_ch
        ~

#TAL:
#        E4P_ch + F6P_ch <> S7P_ch + GAP_ch
#        ~

SBPase:
        SBP_ch -> S7P_ch + Pi_ch
        ~


TKL2:
        GAP_ch + S7P_ch <> X5P_ch + R5P_ch
        ~




R5Piso:
        R5P_ch <> Ru5P_ch
        ~

X5Pepi:
        X5P_ch <> Ru5P_ch
        ~
Ru5Pk:
        Ru5P_ch + ATP_ch -> RuBP_ch + ADP_ch
        ~


#TP/Pi antiport 1 PGA

TP_Pi_apPGA:
        PGA_ch + x_Pi_cyt -> Pi_ch + x_PGA_cyt
        ~


TP_Pi_apGAP:
        GAP_ch + x_Pi_cyt -> Pi_ch + x_GAP_cyt
        ~


TP_Pi_apDHAP:
        DHAP_ch + x_Pi_cyt -> Pi_ch + x_DHAP_cyt
        ~

PGI:
        F6P_ch <> G6P_ch
        ~

PGM:
        G6P_ch <> G1P_ch
        ~

StSynth:
        G1P_ch + ATP_ch -> ADP_ch + 2 Pi_ch + x_Starch_ch
        ~


StPase:
        x_Starch_ch + Pi_ch -> G1P_ch
        ~

#OPPpath:
#        G6P_ch +2 x_NADP_ch -> 2 x_NADPH_ch  +2 x_Proton_ch +  Ru5P_ch + x_CO2
#        ~


Light_react:
        ADP_ch + Pi_ch -> ATP_ch
        ~

None: Meetings/Riga2013/Practicals/Practical_2/Calvin (last edited 2018-01-15 12:24:13 by mark)