ScrumPy Manual

Introduction

Metabolic Modelling

Design Philosophy

Python

ScrumPy Model Description Language

Analysis of Models With ScrumPy

The ScrumPy Modelling Environment

Anatomy of a ScrumPy Model

Kinetic Modelling

Structural Modelling

Linear Programming

Secondary Analysis of Model Results

Data sets

Fitting and Optimisation

Automatic Model Building

Structural Analysis of Models

Kinetic Analysis of Models

Bioinformatics Functions