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| = Instalation = === For the impatient === Down load the tarball and unpack: {{{$ tar zxf ScrumPy.tgz}}} Now cd into the freshly created directory and check the {{{install_conf.py}}} file. Then (as root) {{{# python install.py}}} |
## page was renamed from ScrumPy/InstallNotes = Installing ScrumPy = |
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=== OS === ScrumPy should install on any "Unix-like" system, possibly after tweaking the configuration files (see below). We don't have a Windows version, and we are not currently planning one. If anyone is interested in porting ScrumPy to windows please get in touch. As far as I am aware, there are only two places in the source that would require modification, both of which are concerned with loading shared objects. |
=== Operating Systems === The current version of !ScrumPy can be installed on Debian 8 (Jessie), Ubuntu 1404 (Trusty) or later and Centos 6. Debian 7 (Wheezy) will probably work, but may result in some loss of function and/or require manual intervention, Debian 6 (Squeeze) will only work with a lot of manual intervention and is deprecated. For installation on other Unix-like systems see [[ScrumPy/InstallConf|these notes]] |
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| !ScrumPy requires python 2.7 or 2.8. Python 2.6 ''might ''work but is long obsolete and not reccomended. Python 3 is not currently supported. | |
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| Python 2.6 or 2.7 are recommended. 2.8 would ''probably'' be OK, but has not yet been fully tested, and may produce verbiage concerning Python 3 issues. Python 3 will almost certainly not (at present) work. ScrumPy will (currently) run on 2.5, but this is effectively obsolete and thus not recomended. | == Installation == Download the current [[http://mudsharkstatic.brookes.ac.uk/Download/ScrumPy.tgz|tarball]], unpack it and cd into the newly created !ScrumPyXXXX directory (XXXX is the revision number). Then, as root, execute the install.py script. This will install a number of prerequisite packages which may take some time depending on what is already installed. A number of extension C libraries will also be compiled that may take a little time and generate a fair ammount of verbiage on the terminal. As long as the last line looks something like: |
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| {{{ Makefails = [] }}} this output can safely be ignored. |
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| === Other dependencies === | !ScrumPy will now be installed in |
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| All other dependencies are automatically taken care of by the install script. | {{{ /usr/lib/python2.n/dist-packages/ScrumPy}}}, and a start script installed in |
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| {{{/usr/local/bin/ScrumPy}}} | |
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| == Configuration == | !ScrumPy can now be started by simply typing !ScrumPy at the command line. A few diagnostic messages will appear in the terminal, but these are for information only (see note on SBML below) and not errors. |
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| === General === | Further documentation continues [[ScrumPy/Doc/ModEnv#RunSpy|here]]. |
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| Configuration details are held in the file {{{install_conf.py}}}. The default file is suitable for Debian and Ubuntu platforms (and most likely other Debian derivatives). The file {{{install_conf_SUSE.py}}} is suitable for OpenSUSE (and likely SUSE as well) distributions. If using these then copy {{{install_conf_SUSE.py}}} to {{{install_conf.py}}} === Tweaking install_conf.py === '''Note''' {{{install_conf.py}}} is a Python module and needs to be syntactically correct. For installation purposes there are only two places that might need editing: The list of packages to be installed and the command needed to install them. Both of these are self explanatory. |
== SBML support. == !ScrumPy uses libsbml to to read/write sbml format file. If libsbml is present in your distributions repository it will be installed automatically, otherwise libsbml will need to be installed manually from source (with the python option). |
Installing ScrumPy
Prerequisites
Operating Systems
The current version of ScrumPy can be installed on Debian 8 (Jessie), Ubuntu 1404 (Trusty) or later and Centos 6. Debian 7 (Wheezy) will probably work, but may result in some loss of function and/or require manual intervention, Debian 6 (Squeeze) will only work with a lot of manual intervention and is deprecated. For installation on other Unix-like systems see these notes
Python
ScrumPy requires python 2.7 or 2.8. Python 2.6 might work but is long obsolete and not reccomended. Python 3 is not currently supported.
Installation
Download the current tarball, unpack it and cd into the newly created !ScrumPyXXXX directory (XXXX is the revision number). Then, as root, execute the install.py script. This will install a number of prerequisite packages which may take some time depending on what is already installed. A number of extension C libraries will also be compiled that may take a little time and generate a fair ammount of verbiage on the terminal. As long as the last line looks something like:
Makefails = [] this output can safely be ignored.
ScrumPy will now be installed in
/usr/lib/python2.n/dist-packages/ScrumPy, and a start script installed in
/usr/local/bin/ScrumPy
ScrumPy can now be started by simply typing ScrumPy at the command line. A few diagnostic messages will appear in the terminal, but these are for information only (see note on SBML below) and not errors.
Further documentation continues here.
SBML support.
ScrumPy uses libsbml to to read/write sbml format file. If libsbml is present in your distributions repository it will be installed automatically, otherwise libsbml will need to be installed manually from source (with the python option).