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| The current version of !ScrumPy can be installed on Debian 8 (Jessie), Ubuntu 1404 (Trusty) or later and Centos 6. Debian 7 (Wheezy) will probably work, but may result in some loss of function and/or require manual intervention, Debian 6 (Squeeze) will only work with a lot of manual intervention and is deprecated. For installation on other Unix-like systems see [[ScrumPy/InstallConf|these notes]]. | The current version of !ScrumPy can be installed on Debian (>=9), Ubuntu (>=1804) For installation on other Unix-like systems see [[ScrumPy/InstallConf|these notes]]. |
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| !ScrumPy can also be installed natively on Windows 10. For a guide on this, see [[http://mudsharkstatic.brookes.ac.uk/ScrumPyDoc/scrumpy-on-windows_may2017.pdf|these notes]]. More to follow soon. | !ScrumPy has been reported to work using windows subsystem for linux (WSL). |
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| Installation on Mac's is planned for the second half of 2017. |
Not currently supported |
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| !ScrumPy requires python 2.7 or 2.8. Python 2.6 ''might ''work but is long obsolete and not reccomended. Python 3 is not currently supported. | !ScrumPy requires Python 3, Python 2 is not supported. |
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| Download the current [[http://mudsharkstatic.brookes.ac.uk/Download/ScrumPy.tgz|tarball]], unpack it and cd into the newly created ScrumPyXXXX directory (XXXX is the revision number). Then, as root, execute the install.py script. This will install a number of prerequisite packages which may take some time depending on what is already installed. A number of extension C libraries will also be compiled that may take a little time and generate a fair ammount of verbiage on the terminal. As long as the last line looks something like: | Download the current [[http://mudsharkstatic.brookes.ac.uk/Download/ScrumPy.tgz|tarball]], unpack it and cd into the newly created ScrumPy. Then, as root, execute the install.py script. This will install a number of prerequisite packages which may take some time depending on what is already installed. A number of extension C libraries will also be compiled that may take a little time and generate a fair ammount of verbiage on the terminal. As long as the last line looks something like: |
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| {{{ /usr/lib/python2.n/dist-packages/ScrumPy}}}, and a start script installed in | {{{ /usr/local/lib/python3/dist-packages/ScrumPy}}}, and a start script installed in |
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| !ScrumPy can now be started by simply typing !ScrumPy at the command line. A few diagnostic messages will appear in the terminal, but these are for information only (see note on SBML below) and not errors. | !ScrumPy can now be started by simply typing !ScrumPy3 at the command line. A few diagnostic messages will appear in the terminal, but these are for information only (see note on SBML below) and not errors. |
Installing ScrumPy
Prerequisites
Operating Systems
The current version of ScrumPy can be installed on Debian (>=9), Ubuntu (>=1804) For installation on other Unix-like systems see these notes.
Windows
ScrumPy has been reported to work using windows subsystem for linux (WSL).
Mac
Not currently supported
Python
ScrumPy requires Python 3, Python 2 is not supported.
Installation
Download the current tarball, unpack it and cd into the newly created ScrumPy. Then, as root, execute the install.py script. This will install a number of prerequisite packages which may take some time depending on what is already installed. A number of extension C libraries will also be compiled that may take a little time and generate a fair ammount of verbiage on the terminal. As long as the last line looks something like:
Makefails = [] this output can safely be ignored.
ScrumPy will now be installed in
/usr/local/lib/python3/dist-packages/ScrumPy, and a start script installed in
/usr/local/bin/ScrumPy
ScrumPy can now be started by simply typing ScrumPy3 at the command line. A few diagnostic messages will appear in the terminal, but these are for information only (see note on SBML below) and not errors.
Further documentation continues here.
SBML support.
ScrumPy uses libsbml to to read/write sbml format file. If libsbml is present in your distributions repository it will be installed automatically, otherwise libsbml will need to be installed manually from source (with the python option).