C1Net Workshop 3 on Metabolic Modelling

Tutors

Course Timetable and Resources Index

Day

Time

Place

Activity

Links

Lecturer

Monday

12:00

Registration opens at St James Hotel

23/1/17

12:30

Oak Room

Lunch

13:30

Great Room

Opening and introductions

DF

14:00

L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week

Slides

DF

15:30

Tea/coffee

16:00

L2. Computational representation of metabolic networks

Slides

MP

17:00

P1. Computers: checking internet connectivity, software installation.

Installation of ScrumPy.

DF, MP, NM,RN,NP

18:00

Close and room registration (cont)

19:00

Oak Room

Dinner

Tuesday

08:00

Breakfast

24/1/17

09:00

L3. Sources of data for metabolic models

Slides

DF

10:00

L4. Null space and elementary modes

Slides

DF

10:30

Coffee/Tea

11:00

P2. Python and ScrumPy

Instructions

DF, MP, NM,RN,NP

12:30

Lunch

13:30

P2 continued

DF, MP, NM,RN,NP

15:30

Tea/Coffee

16:00

L5. Biotechnological applications of metabolic network analysis

Slides

DF

17:00

P3. Models, kernels, subsets and elementary modes

Instructions

DF, MP, NM,RN,NP

17:30

Close

19:00

Dinner

Wednesday

08:00

Breakfast

25/1/17

09:00

L6. Linear Programming and Flux Balance Analysis

Slides

MP

L7. Building genome-scale metabolic networks

Slides

MP

10:30

Coffee/Tea

11:00

P4. Elementary modes of a simple model

Instructions

DF, MP, NM,RN,NP

12:30

Lunch + free time (Nottingham Castle and Caves?)

15:30

Tea/Coffee

15:45

L8. Accessing BioCyc databases from ScrumPy

Slides

MP

16:00

P5. Building models from MetaCyc with ScrumPy

Instructions

DF, MP, NM,RN,NP

18:00

Close

19:00

Dinner

Thursday

08:00

Breakfast

26/1/17

09:00

L9. Examples of genome scale modelling

Noah's slides; Rupert's slides; Nicole's slides

NM, RN, NP

10:30

Coffee/Tea

11:00

P6. Flux Balance Analysis of fatty acid biosynthesis in E coli.

Instructions

DF, MP, NM,RN,NP

12:30

Lunch

13:30

L10. Identification of novel anti-microbial targets

Slides

MP

14:30

P6 continued

DF, MP, NM,RN,NP

15:30

Tea/Coffee

16:00

P7. Analysing a genome scale model

Instructions

DF, MP, NM,RN,NP

17:30

Close

19:00

Workshop dinner

Friday

08:00

Breakfast

27/1/17

09:00

P7 continued

DF, MP, NM,RN,NP

10:30

Coffee/Tea

11:00

Discussion of results and prospective applications of modelling in attendees' projects

DF, MP, NM,RN,NP

12:00

Any questions? Closing remarks

DF& MP

12:30

(Sandwich?) lunch and departure

None: Meetings/C1netWork3/Plan (last edited 2018-01-08 18:02:28 by david)