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| ||PM||14:00||Guest lecture - Synthetic Biology: Uncovering principles of biological design applying math and experiments.|| ||Dr. Rodriguez-Caso|| | ||PM ||14:00 ||Guest lecture - Synthetic Biology: Uncovering principles of biological design applying math and experiments. || ||Dr. Rodriguez-Caso || |
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| || || ||Lecture 4. Linear programming and Flux Balance Analysis||[[http://mudsharkstatic.brookes.ac.uk/Barcelona2023/L4.pdf|Slides]]||YS|| | || || ||Lecture 4. Linear programming and Flux Balance Analysis ||[[http://mudsharkstatic.brookes.ac.uk/Barcelona2023/L4.pdf|Slides]] ||YS || |
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| || || ||Break|| || || | || || ||Break || || || |
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| || || ||Lunch|| || || | || || ||Lunch || || || |
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| || || || || || || ||Friday|| ''' ''' ||?? Lecture 7: construction and validation ?? ||[[http://mudsharkstatic.brookes.ac.uk/Barcelona2023/L7.pdf|Slides]] ||DS || ||Friday || || || || || || || ||Finish practicals/General discussion/Something else || || || || || ||Go Home || || || |
||Friday|| ||Lecture 7: construction and validation||[[http://mudsharkstatic.brookes.ac.uk/Barcelona2023/L7.pdf|Slides]]|| || || || ||Finish practicals/General discussion/Something else|| || || || ||13:00||Lunch|| || || || || ||Go home!|| || || ''' ''' |
Innotargets: Introduction to Metabolic Modelling
DRAFT/UNDER CONSTRUCTION - STUDENTS PLEASE IGNORE
Barcelona 2023
Tutors
- Mark Poolman (MP: Oxford Brookes University)
- Oliver Ebenhoeh (OE: Heinrich Heine University, Dusseldorf)
- Yanica Said (YS: Oxford Brookes University)
- Dipali Singh (DS: Quadram Institute, Norwich)
Guest Speaker ??
- TBA ??
Reading List ??
- Suggestions ?
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Tuesday |
AM |
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|
30/05/23 |
09:00 |
Arrival, Admin & Registration Hotel check-in etc |
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PM |
|
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|
13:00 |
Lunch |
|
|
|
14:00 |
Welcome and introduction to the course - why do modelling? |
MP |
|
|
|
Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. |
YS |
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|
Tea/coffee |
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Lecture 2: Python and computational representation of metabolic networks. |
MP |
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P1. Computers: checking internet connectivity, software installation. |
Installation of ScrumPy. |
All |
|
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Close |
|
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Wednesday |
AM |
|
|
|
|
09:00 |
P2. Python and ScrumPy |
All |
|
|
|
Lecture 3: Null space, subsets and elementary modes |
OE |
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|
11:00 |
Break |
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P3. Null space, subsets and elementary modes |
All |
|
|
13:00 |
Lunch |
|
|
PM |
14:00 |
Guest lecture - Synthetic Biology: Uncovering principles of biological design applying math and experiments. |
|
Dr. Rodriguez-Caso |
|
15:00 |
Depart social activity |
All |
|
Thursday |
|
|
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|
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Lecture 4. Linear programming and Flux Balance Analysis |
YS |
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Lecture 5: S. typhim model |
MP |
|
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|
Break |
|
|
|
|
S.typhim prac |
All |
|
|
|
Lunch |
|
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Lecture 6: Determination of minimal media requirements for Campylobacter jejuni |
DS |
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P5: Determination of minimal media requirements for Campylobacter jejuni |
All |
|
Friday |
|
Lecture 7: construction and validation |
|
|
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|
Finish practicals/General discussion/Something else |
|
|
|
13:00 |
Lunch |
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Go home! |
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