Differences between revisions 2 and 4 (spanning 2 versions)

Innotargets: Introduction to Metabolic Modelling

DRAFT/UNDER CONSTRUCTION - STUDENTS PLEASE IGNORE

Barcelona 2023

Tutors

Mark Poolman (MP: Oxford Brookes University)
Oliver Ebenhoeh (OE: Heinrich Heine University, Dusseldorf)
Yanica Said (YS: Oxford Brookes University)
Dipali Singh (DS: Quadram Institute, Norwich)
Hester Chapman (HC: University of Nottingham)

Guest Speaker ??

TBA ??

Reading List ??

Suggestions ?

Course Timetable and Resources

Day	Time	Activity	Links	Lecturer
Tuesday	AM
30/05/23	09:00 ??	Arrival, Admin & Registration (timing TBC)
	0X:YZ	? Welcome and introduction to the course. Outline of the week. ?
	PM
	12:00??	Lunch
	13:00	Welcome and introduction to the course. Outline of the week.		MP et al
		Lecture 1: Who? What? Guest Speaker?	Slides	???
		Lecture 2: Introduction to metabolic modelling. Mathematical representation of metabolic networks.	Slides	DS
		Tea/coffee
		Lecture 3: Python and computational representation of metabolic networks.	Slides	MP
		P1. Computers: checking internet connectivity, software installation.	Installation of ScrumPy.	All
		Close
Wednesday	AM
	09:00	P2. Python and ScrumPy	Prac2	All
		Lecture 4: Null space, subsets and elementary modes	Slides	MP
	11:00	Break
		P3. Null space, subsets and elementary modes	Prac3	All
	13:00	Lunch
	PM	Lecture 5. Biotechnological applications of elementary modes analysis	Slides	DF
	15:00	Depart social activity	Prac4	All
Thursday
	09:00	Lecture 6: Linear programming and Flux Balance Analysis	Slides	MP
		Lecture 7 : Validation and construction of models	Slides	DS
	11:00	Break
		Lecture 8: Determination of minimal media requirements for Campylobacter jejuni	Slides	DS
		P5: Determination of minimal media requirements for Campylobacter jejuni	Prac5	DS
	13:00	Lunch
	PM	Lecture 9: ??? staph epi ??	Slides	DS
		P6. Identifying pathways for TAG synthesis in P. tricornutm	Prac6	All
	16:45	close

None: Meetings/Barcelona2023/Timetable (last edited 2023-05-29 12:34:39 by mark)

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-== DRAFT/UNDER CONSTRUCTION STUDENTS PLEASE IGNORE ==
+== DRAFT/UNDER CONSTRUCTION - STUDENTS PLEASE IGNORE ==
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-||03/04/22 ||09:00 ||Arrival, Admin & Registration || || ||
+||30/05/23 ||09:00 ?? ||Arrival, Admin & Registration (timing TBC) || || ||
|| ||0X:YZ|| ? Welcome and introduction to the course.    Outline of the week. ?|| || ||
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-|| ||12:00 ||Lunch || || ||
+|| ||12:00?? ||Lunch || || ||
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-|| || ||Lecture 1: Who? What? ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L1.pdf|Slides]] ||??? ||
+|| || ||Lecture 1: Who? What? Guest Speaker? ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L1.pdf|Slides]] ||??? ||
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-|| ||13:00 ||Lunch + Social Acitivity - visit to the Sagrada Familia || || ||
+|| ||13:00 ||Lunch || || ||
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-|| || ||P4.   Elementary Modes of the Woods-Ljungdahl Pathway ||[[https://mudshark.brookes.ac.uk/Meetings/Nottingham2022/Prac4|Prac4]] ||All ||
+|| ||15:00||Depart social activity ||[[https://mudshark.brookes.ac.uk/Meetings/Nottingham2022/Prac4|Prac4]] ||All ||
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-|| ||PM          ''' ''' ||Lecture 9: ''Phaeodactylum tricornutm'' for biofuel synthesis ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L9.pdf|Slides]] ||DS ||
+|| ||PM          ''' ''' ||Lecture 9: ??? staph epi ?? ||[[http://mudsharkstatic.brookes.ac.uk/Nottingham2022/L9.pdf|Slides]] ||DS ||
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