|
Size: 3364
Comment:
|
Size: 3368
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 25: | Line 25: |
| || || ||Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. ||[[http://mudsharkstatic.brookes.ac.uk/Barcelona/L1.pdf|Slides]] ||YS || | || || ||Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. ||[[http://mudsharkstatic.brookes.ac.uk/Barcelona2023/L1.pdf|Slides]] ||YS || |
Innotargets: Introduction to Metabolic Modelling
DRAFT/UNDER CONSTRUCTION - STUDENTS PLEASE IGNORE
Barcelona 2023
Tutors
- Mark Poolman (MP: Oxford Brookes University)
- Oliver Ebenhoeh (OE: Heinrich Heine University, Dusseldorf)
- Yanica Said (YS: Oxford Brookes University)
- Dipali Singh (DS: Quadram Institute, Norwich)
- Hester Chapman (HC: University of Nottingham)
Guest Speaker ??
- TBA ??
Reading List ??
- Suggestions ?
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Tuesday |
AM |
|
|
|
30/05/23 |
09:00 |
Arrival, Admin & Registration Hotel check-in etc |
|
|
|
|
|
|
|
|
PM |
|
|
|
|
12:00 |
Lunch |
|
|
|
13:00 |
Welcome and introduction to the course |
|
MP |
|
|
Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. |
YS |
|
|
|
Tea/coffee |
|
|
|
|
Lecture 2: Python and computational representation of metabolic networks. |
MP |
|
|
|
P1. Computers: checking internet connectivity, software installation. |
Installation of ScrumPy. |
All |
|
|
Close |
|
|
Wednesday |
AM |
|
|
|
|
09:00 |
P2. Python and ScrumPy |
All |
|
|
|
Lecture 3: Null space, subsets and elementary modes |
OE |
|
|
11:00 |
Break |
|
|
|
|
P3. Null space, subsets and elementary modes |
All |
|
|
13:00 |
Lunch |
|
|
|
PM |
Lecture 4. Linear programming and Flux Balance Analysis |
YS |
|
|
15:00 |
Depart social activity |
All |
|
Thursday |
|
|
|
|
|
09:00 |
Lecture 5: S. typhim model |
MP |
|
|
|
S.typhim prac |
All |
|
|
11:00 |
Break |
|
|
|
|
Lecture 6: Determination of minimal media requirements for Campylobacter jejuni |
DS |
|
|
|
P5: Determination of minimal media requirements for Campylobacter jejuni |
All |
|
|
13:00 |
Lunch |
|
|
|
PM |
Lecture 7: staph epi |
DS |
|
|
|
P6. Using the staph epi model |
All |
|
Friday |
|
|
|
|
|
|
Guest Lecture |
|
|
|
|
Finnish practicals/General discussion/Something else |
|
|
|
|
Lunch |
|
|
|
|
Go Home |
|
|